Pinned Repositories
bioruby-plates
Library for working with 96-well plate annotations, including rearranging to 384-well+
bioruby-sam-mutation
Parsing and mutation calling from SAM, CIGAR and MD:Z.
bioruby-samtools
Porting of samtools-ruby to BioRuby. Binder of samtools for ruby, on the top of FFI -from original project-
biovim
Reverse-complement sequence search plugin for Vim
celigo-ruby
Ruby methods for parsing Celigo output files
crisp.icr
crisprion
Ruby classes for parsing SAM files and the MD:Z tag generated by BWA. Geared towards annotating CRISPR-induced mutations (relative to a given expected cleavage position) from Ion Torrent sequencing data.
lsf
Simple job submission to LSF for Ruby
openfoodnetwork
Connect suppliers, distributors and consumers for the sale and purchase of local produce
slack-pubmed
Utility to spam a slack channel with pubmed search results
stveep's Repositories
stveep/biovim
Reverse-complement sequence search plugin for Vim
stveep/bioruby-plates
Library for working with 96-well plate annotations, including rearranging to 384-well+
stveep/bioruby-sam-mutation
Parsing and mutation calling from SAM, CIGAR and MD:Z.
stveep/bioruby-samtools
Porting of samtools-ruby to BioRuby. Binder of samtools for ruby, on the top of FFI -from original project-
stveep/celigo-ruby
Ruby methods for parsing Celigo output files
stveep/crisp.icr
stveep/crisprion
Ruby classes for parsing SAM files and the MD:Z tag generated by BWA. Geared towards annotating CRISPR-induced mutations (relative to a given expected cleavage position) from Ion Torrent sequencing data.
stveep/lsf
Simple job submission to LSF for Ruby
stveep/openfoodnetwork
Connect suppliers, distributors and consumers for the sale and purchase of local produce
stveep/slack-pubmed
Utility to spam a slack channel with pubmed search results
stveep/grid
stveep/kinase-dependency-profiling
R scripts used to analyse data for "Large-Scale Profiling of Kinase Dependencies in Cancer Cell Lines" (http://dx.doi.org/10.1016/j.celrep.2016.02.023)
stveep/ofn-install
Ansible scripts for provisioning and deploying Open Food Network
stveep/pb-pool
Pooled barcoded transposon screen analysis
stveep/ruby-ensembl-api
A ruby API to the Ensembl database
stveep/screens
R code for analysing drug screens (multi wells and pools)
stveep/stveep.github.io
stveep/tfl-journey
TFL journey time optimiser
stveep/tidyscreens
stveep/transposon
stveep/transposon-sanger
Mapping PB integrations from Sanger (e.g.) sequencing data
stveep/uhom
Microhomology simulation script
stveep/vim-examples
Examples and installation instructions for vim intro at Ruby Hacknight