/workflow-testing

Automated testing of workflows against UseGalaxy.eu

Primary LanguageShell

UseGalaxy.eu Workflow Testing

Based off of jmchilton's template, except running tests against UseGalaxy.eu

Testing

We are automatically running these workflows against UseGalaxy.eu

Workflow Status
example1/wf3-shed-tools.ga Build Status
example2/wf4-shed-tools.ga Build Status
training/epigenetics/hicexplorer/hicexplorer.ga Build Status
blockclust/blockclust_workflow.ga Build Status
training/variant-analysis/microbial-variants/microbial_variant_calling.ga Build Status
training/sequence-analysis/quality-control/quality_control.ga Build Status
training/sequence-analysis/mapping/mapping.ga Build Status
training/chip-seq/formation_of_super-structures_on_xi/formation_of_super_structures_on_xi.ga Build Status
training/assembly/general-introduction/assembly-general-introduction.ga Build Status
training/assembly/unicycler-assembly/unicycler.ga Build Status
training/metagenomics/general-tutorial/amplicon.ga Build Status
training/transcriptomics/ref-based/ref_based.ga Build Status
GraphClust2/GC-lite.ga Build Status
sklearn/ard/ard.ga Build Status
sklearn/adaboost/adaboost.ga Build Status
training/variant-analysis/mapping-by-sequencing/mapping_by_sequencing.ga Build Status
training/proteomics/protein-id-sg-ps/protein-id-sg-ps.ga Build Status
training/proteomics/protein_quant_sil/protein_quant_sil.ga Build Status
training/statistics/machine_learning/classification/linear_SVC_classification.ga Build Status
training/statistics/machine_learning/regression/gradient_boosting_regression.ga Build Status

Pretty-printing Worfklow JSON

You can use the command line tool jq to pretty-print the workflow .ga files:

cat wf.ga | jq . -S > out.ga

or this webservice: https://jsonformatter.org/