/mimic3-utils

A repository for cleaning and extracting MIMIC-III dataset for various tasks.

Primary LanguageJupyter NotebookApache License 2.0Apache-2.0

README

This repository contains utility functions for working on data from the MIMIC-III medical database. The scripts and notebooks here will include utilities for:

  • Cleaning clinical texts including replacing redacted information with unique tokens
  • Extracting and subsetting the dataset for specific tasks mainly taken from the MIMIC3-Benchmarks reposityory

We will update the README as more utilies are added.