Pinned Repositories
applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2020
awesome-alternative-splicing
Alternative splicing resource
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
CF_Epigenetics
R code repository for statistical analysis and data visualization of manuscript "Genome-wide DNA methylation profiling shows a distinct epigenetic signature associated with Lung Macrophages in cystic fibrosis"
CirComPara
:microscope: A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
Equivalent-Junctions
EWAS-fusion
Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)
EWASplus
MOSTWAS
Multi-Omic Strategies for TWAS
vcf2gwas
Python API for comprehensive GWAS analysis using GEMMA
sudhanshu1610's Repositories
sudhanshu1610/awesome-alternative-splicing
Alternative splicing resource
sudhanshu1610/Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
sudhanshu1610/MOSTWAS
Multi-Omic Strategies for TWAS
sudhanshu1610/vcf2gwas
Python API for comprehensive GWAS analysis using GEMMA
sudhanshu1610/applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2020
sudhanshu1610/CF_Epigenetics
R code repository for statistical analysis and data visualization of manuscript "Genome-wide DNA methylation profiling shows a distinct epigenetic signature associated with Lung Macrophages in cystic fibrosis"
sudhanshu1610/CirComPara
:microscope: A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
sudhanshu1610/Equivalent-Junctions
sudhanshu1610/EWAS-fusion
Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)
sudhanshu1610/EWASplus
sudhanshu1610/focus
FOCUS: Fine-mapping Of CaUsal gene Sets
sudhanshu1610/fusion_twas
methods for functional summary-based imputation
sudhanshu1610/iab2
An Introduction to Applied Bioinformatics, 2nd Edition
sudhanshu1610/imageCCA
Code for preparing and running the imageCCA method.
sudhanshu1610/ldsc
LD Score Regression (LDSC)
sudhanshu1610/MetaXcan
MetaXcan software and manuscript
sudhanshu1610/METRO
Multi-ancEstry TRanscriptOme-wide analysis
sudhanshu1610/Neurohacking
Neurohacking Coursera Course
sudhanshu1610/pgcvideotextbook
sudhanshu1610/Predicting-TWAS-features
Tool for predicting TWAS features (e.g. gene expression) in a target sample
sudhanshu1610/PrediXcan
PrediXcan Project
sudhanshu1610/sCCA-ACAT_TWAS
Repository for the code to conduct sCCA+ACAT multi-tissue TWAS approach
sudhanshu1610/scRNA-seq
sudhanshu1610/sudhanshu1610.github.io
sudhanshu1610/tensorflow
An Open Source Machine Learning Framework for Everyone
sudhanshu1610/TWMR
sudhanshu1610/UTMOST
UTMOST (unified test for molecular signatures) is a method for cross-tissue gene expression imputation for transcriptome-wide association analyses.