Lee Lab @ UW Allen School

attributionpriors

Tools for training explainable models using attribution priors.

contrastiveVI

cxr_adv

Repository for the paper "An Adversarial Approach for the Robust Classification of Pneumonia from Chest Radiographs"

cxr_covid

Code for paper "AI for radiographic COVID-19 detection selects shortcuts over signal"

DeepProfile

DeepProfile framework, which learns a variational autoencoder (VAE) network from a vast quantity of publicly available gene expression samples and uses the learned network to encode a low-dimensional representation (LDR) for predicting complex phenotypes

IMPACT

This repository provides the dataset and code of Interpretable machine learning prediction of all-cause mortality.

MONET

Transparent medical image AI via an image–text foundation model grounded in medical literature

path_explain

A repository for explaining feature attributions and feature interactions in deep neural networks.

treeexplainer-study

Code and documentation for experiments in the TreeExplainer paper

vit-shapley

suinleelab/path_explain

A repository for explaining feature attributions and feature interactions in deep neural networks.

suinleelab/attributionpriors

Tools for training explainable models using attribution priors.

suinleelab/contrastiveVI

suinleelab/MONET

Transparent medical image AI via an image–text foundation model grounded in medical literature

suinleelab/cxr_covid

Code for paper "AI for radiographic COVID-19 detection selects shortcuts over signal"

suinleelab/vit-shapley

suinleelab/IMPACT

This repository provides the dataset and code of Interpretable machine learning prediction of all-cause mortality.

suinleelab/shapley_algorithms

suinleelab/DeepSHAP

Experiments for DeepSHAP paper.

suinleelab/MD-AD

suinleelab/PAUSE

Code for paper "Principled feature attribution for unsupervised gene expression analysis"

suinleelab/coai

Cost-Aware AI

suinleelab/derm_audit

suinleelab/express

Code for paper "Uncovering expression signatures of synergistic drug response in acute myeloid leukemia by explaining AI ensembles"

suinleelab/HD-AE

Code for paper "Transferable representations of single-cell transcriptomic data"

suinleelab/MM-cVAE

Implementation of the moment matching contrastive VAE

suinleelab/deepprofile-study

Code for paper "A deep profile of gene expression across 18 human cancers"

suinleelab/DIME

Code for the paper "Estimating Conditional Mutual Information for Dynamic Feature Selection"

suinleelab/ENABLAge

suinleelab/methylVI

A deep generative model for single-cell methylation data

suinleelab/Useful_Datasets_CSE_527

suinleelab/cl-explainability

Contrastive Corpus Attribution (COCOA)

suinleelab/contrastiveVI-reproducibility

Repository for reproducing contrastiveVI results.

suinleelab/CFS

Implementation of contrastive feature selection

suinleelab/deepprofile-data

Data for "A deep profile of gene expression across 18 human cancers"

suinleelab/EEDRP

suinleelab/PAC

Pathway Communities

suinleelab/removal-robustness

suinleelab/StrastiveVI

suinleelab/suinleelab.github.io

Project website