This repository contains resources and instructions for performing ATAC-seq analysis on Chronic Lymphocytic Leukemia (CLL) samples using the Terra platform.
ATAC-seq analysis on Chronic Lymphocytic Leukemia (CLL) samples using the Terra platform.
The data folder contains a TSV file formatted for upload into the Terra platform. This file includes the necessary metadata and paths to the input data for the workflow.
Due to the limitations of the WDL (Workflow Description Language) used in this project, variables cannot be dynamically assigned as inputs. Therefore, we have created eight JSON files in json foler, one for each sample.
- Upload the JSON files in the workflow input section of the Terra platform.
- Save and run the workflow to obtain your results.
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Performance Optimization:
- Consider utilizing more CPU resources to accelerate the processing time.
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Parameter Adjustment:
- Fine-tune parameters, such as incorporating a blacklist to filter out problematic regions, for improved results.