irods_2_figshare
ToDo (Ask Markus):
- Meta + user data from the file need to be sendt to FigShare...
- Send Mail/note to user about online URL.
This is a PoC of copying files from iRODS to FigShare via PigShare (installed with pip)
yum update ; yum -y install python-pip
pip install git+git://github.com/iPlantCollaborativeOpenSource/pycommands.git
pip install --upgrade pip
pip install --upgrade git+git://github.com/irods/python-irodsclient.git
pip install pigshare
pip install --upgrade pigshare
pigshare is from my NZ-friend : Markus Binsteiner @ https://github.com/makkus/pigshare
Clone : https://github.com/makkus/pigshare.git
I use a CentOS 7... with a iRODS 4.1.x (testing with 4.1.9 and 4.2)
Build from my bash script https://github.com/sunadtudk/irods_2_figshare/blob/master/Irods-install.sh
The Test : Start with : nano /home/giraf/.pigshare.conf
the file :
[default]
url = https://api.figshare.com/v2
token = aff111111111111111111111111111111111111111111111111111436043762311191deadbeef1deadbeef1deadbeef1deadbeef1deadbeef1deadbeef
token is the Personal Tokens found under : https://figshare.com/account/applications
[giraf@irods.dtu.dk ~]$ pigshare create_article --article '{"title": "irods test", "custom_fields": {"key1": "from_irods"}}'
{
"location": "https://api.figshare.com/v2/account/articles/3393111"
}
[giraf@irods.dtu.dk ~]$ pigshare upload_new_file --id 3393111 figshare_test.txt
Expecting value: line 1 column 1 (char 0)