Pinned Repositories
sbx_contigs
sbx_demic
A sunbeam extension to run DEMIC, a peak-to-trough ratio generator for bacteria short-reads
sbx_gene_clusters
sbx_krakenhll
sbx_report
Generates a final report, with figures, from a Sunbeam run
sbx_shortbred
sbx_silva18S
sbx_template
Template for Sunbeam extensions.
sbx_virus_id
sunbeam
A robust, extensible metagenomics pipeline
Sunbeam Labs's Repositories
sunbeam-labs/sunbeam
A robust, extensible metagenomics pipeline
sunbeam-labs/sbx_demic
A sunbeam extension to run DEMIC, a peak-to-trough ratio generator for bacteria short-reads
sunbeam-labs/sbx_krakenhll
sunbeam-labs/sbx_report
Generates a final report, with figures, from a Sunbeam run
sunbeam-labs/sbx_template
Template for Sunbeam extensions.
sunbeam-labs/sbx_gene_clusters
sunbeam-labs/sbx_contigs
sunbeam-labs/sbx_test_action
GH Action for testing sunbeam extensions
sunbeam-labs/sbx_assembly
Sunbeam extension for assembly (megahit) and annotation (prodigal)
sunbeam-labs/sbx_fungi_mapping
sunbeam-labs/sbx_igv
IGV extension for Sunbeam
sunbeam-labs/sbx_metaphlan4
Sunbeam extension for metaphlan 4 (compatible with sunbeam 4)
sunbeam-labs/sbx_metaspades_example
Example Sunbeam extension for assembly with metaspades.
sunbeam-labs/sbx_phase_finder
sunbeam-labs/sbx_shortbred
sunbeam-labs/sbx_silva18S
sunbeam-labs/sbx_spades
sunbeam-labs/sbx_subsample
Sunbeam extension to subsample reads after quality control
sunbeam-labs/sbx_virus_id
sunbeam-labs/sbx_vsearch
Sunbeam extension for Vsearch (https://github.com/torognes/vsearch)
sunbeam-labs/sunbeam-labs.github.io
sunbeam-labs/sunbeam-poster
Poster for ASM NGS 2018
sunbeam-labs/sbx_anvio
sunbeam-labs/sbx_coassembly
Sunbeam extension to co-assemble metagenomic reads using Megahit
sunbeam-labs/sbx_genome_assembly
sunbeam-labs/sbx_kaiju
Kaiju metagenomics classifier for Sunbeam
sunbeam-labs/sbx_kraken
Extension for running kraken2 and kraken2-biom
sunbeam-labs/sbx_mapping
Extension to map reads against a set of reference genomes
sunbeam-labs/sbx_metaphlan
Sunbeam extension for running MetaPhlAn
sunbeam-labs/sbx_shotgun_unifrac
Sunbeam extension for assigning metagenomic reads to a full bacterial phylogeny