Sunbeam Labs

Code related to the Sunbeam whole-genome shotgun sequencing pipeline

Pinned Repositories

sbx_contigs
Language:R1 2 01
sbx_demic
A sunbeam extension to run DEMIC, a peak-to-trough ratio generator for bacteria short-reads
Language:Perl3 3 51
sbx_gene_clusters
Language:Python2 2 25
sbx_krakenhll
3 2 02
sbx_report
Generates a final report, with figures, from a Sunbeam run
Language:HTML3 3 81
sbx_shortbred
0 2 00
sbx_silva18S
0 3 00
sbx_template
Template for Sunbeam extensions.
Language:Python3 2 72
sbx_virus_id
Language:Python0 2 80
sunbeam
A robust, extensible metagenomics pipeline
Language:Python166 9 24540

Sunbeam Labs's Repositories

sunbeam-labs/sunbeam
A robust, extensible metagenomics pipeline
Language:Python166 9 24540
sunbeam-labs/sbx_demic
A sunbeam extension to run DEMIC, a peak-to-trough ratio generator for bacteria short-reads
Language:Perl3 3 51
sunbeam-labs/sbx_krakenhll
3 2 02
sunbeam-labs/sbx_report
Generates a final report, with figures, from a Sunbeam run
Language:HTML3 3 81
sunbeam-labs/sbx_template
Template for Sunbeam extensions.
Language:Python3 2 72
sunbeam-labs/sbx_gene_clusters
Language:Python2 2 25
sunbeam-labs/sbx_contigs
Language:R1 2 01
sunbeam-labs/sbx_test_action
GH Action for testing sunbeam extensions
1 2 30
sunbeam-labs/sbx_assembly
Sunbeam extension for assembly (megahit) and annotation (prodigal)
Language:Python0 3 20
sunbeam-labs/sbx_fungi_mapping
0 2 00
sunbeam-labs/sbx_igv
IGV extension for Sunbeam
Language:Python0 2 00
sunbeam-labs/sbx_metaphlan4
Sunbeam extension for metaphlan 4 (compatible with sunbeam 4)
Language:Python0 2 31
sunbeam-labs/sbx_metaspades_example
Example Sunbeam extension for assembly with metaspades.
0 1 00
sunbeam-labs/sbx_phase_finder
Language:Python0 2 10
sunbeam-labs/sbx_shortbred
0 2 00
sunbeam-labs/sbx_silva18S
0 3 00
sunbeam-labs/sbx_spades
0 2 11
sunbeam-labs/sbx_subsample
Sunbeam extension to subsample reads after quality control
0 2 00
sunbeam-labs/sbx_virus_id
Language:Python0 2 80
sunbeam-labs/sbx_vsearch
Sunbeam extension for Vsearch (https://github.com/torognes/vsearch)
Language:Python0 3 11
sunbeam-labs/sunbeam-labs.github.io
Language:CSS0 1 32
sunbeam-labs/sunbeam-poster
Poster for ASM NGS 2018
0 3 00
sunbeam-labs/sbx_anvio
3 0
sunbeam-labs/sbx_coassembly
Sunbeam extension to co-assemble metagenomic reads using Megahit
Language:Python2 22
sunbeam-labs/sbx_genome_assembly
Language:Python6 53
sunbeam-labs/sbx_kaiju
Kaiju metagenomics classifier for Sunbeam
1 33
sunbeam-labs/sbx_kraken
Extension for running kraken2 and kraken2-biom
Language:Python2 51
sunbeam-labs/sbx_mapping
Extension to map reads against a set of reference genomes
Language:Python2 71
sunbeam-labs/sbx_metaphlan
Sunbeam extension for running MetaPhlAn
2 53