sundarvenkata-EBI

sundarvenkata-EBI's Repositories

• sundarvenkata-EBI/accession-commons

  Generic library for accessioning any type of object

  Language:Java

• sundarvenkata-EBI/amp-t2d-accession

  AMP T2D accessioning service

• sundarvenkata-EBI/confluence_to_jira_markdown

  Confluence to JIRA markdown

  Language:Scala

• sundarvenkata-EBI/contig-alias

  Service to provide synonyms of chromosome/contig identifiers

• sundarvenkata-EBI/covid19dp-process

  Covid 19 DP process

• sundarvenkata-EBI/covid19dp-submission

  Covid-19 data portal submissions

  Language:Python

• sundarvenkata-EBI/datastore

  Datastore library for querying RDBMS and NoSQL databases

• sundarvenkata-EBI/ega-accession

  EGA accessioning service

• sundarvenkata-EBI/eva-accession

  EVA non-human variant accessioning service

  Language:Java

• sundarvenkata-EBI/eva-assembly-ingestion

  Automation for ingesting a new assembly for a species

• sundarvenkata-EBI/eva-common-groovyutils

  EBI EVA - Common Groovy Utilities

  Language:Groovy

• sundarvenkata-EBI/eva-common-pyutils

  EBI EVA - Common Python Utilities

  Language:Python

• sundarvenkata-EBI/eva-ebi-search-export

  Scripts to export EVA data and metadata to EBI search

• sundarvenkata-EBI/eva-metrics

  Metrics Library for collecting and storing all kinds of metrics from projects and pipelines

  Language:Java

• sundarvenkata-EBI/eva-omicsdi-export

  Tool for exporting EVA data and metadata in a format compatible with the Omics Discovery Index (http://www.omicsdi.org/)

• sundarvenkata-EBI/eva-pipeline

  Genomic variation pipeline for the European Variation Archive, implemented using Spring Batch

  Language:Java

• sundarvenkata-EBI/eva-sub-cli

  EVA Submission Command Line Interface for Validation

  Language:HTML

• sundarvenkata-EBI/eva-submission-1

  Components that connect and automate main tasks in the EVA workflow

  Language:Python

• sundarvenkata-EBI/eva-submission-ws

  Web services for EVA Submissions

  Language:Java

• sundarvenkata-EBI/eva-tasks

  Code used to to perform tasks or one of analysis.

  Language:Jupyter Notebook

• sundarvenkata-EBI/eva-tools

  Tools compatible with the infrastructure of the European Variation Archive pipeline

  Language:Java

• sundarvenkata-EBI/eva-vcf-merge-1

  Tool for merging large sets of VCF files

• sundarvenkata-EBI/eva-web

  Web front-end for the European Variation Archive

  Language:JavaScript

• sundarvenkata-EBI/eva-ws

  European Variation Archive REST web services API

  Language:Java

• sundarvenkata-EBI/examples

  Structurizr examples

• sundarvenkata-EBI/kafka-embassy

  Kafka Embassy

• sundarvenkata-EBI/mongodb-embassy

  MongoDB set up on Embassy Cloud

• sundarvenkata-EBI/opencga

  An Open Computational Genomics Analysis platform for big data processing and analysis in genomics

  Language:Java

• sundarvenkata-EBI/variation-commons

  Library of core components to be used from multiple EBI Variation projects

  Language:Java

• sundarvenkata-EBI/vcf-validator

  Validation suite for Variant Call Format (VCF) files, implemented using C++11

  Language:C