Fundamentals of Neuroscience

This repository is to summarize and archive the materials of the course Fundamentals of Neuroscience at edX.

Part 1: The Electrical Properties of the Neuron

Fundamentals of Neuroscience, Part 1: The Electrical Properties of the Neuron

  • Lesson 1: The Resting Potential
    • The History of Bioelectricity
    • Voltage
    • Introducing the Resting Potential
    • Diffusion and Electrostatics
    • Potentials and Equilibrium
    • Fleet Week!
    • The Nernst Potential
    • Nernst Potential Problem Solving
    • The GHK Equation
    • Ion Filters
    • The Sodium/Potassium Pump
    • Lesson 1: Conclusion
    • (Extras!) Museum of Science
    • (Extras!) The Human Brain
  • Lesson 2: Passive Membrane Properties
    • Introduction: Passive Membrane Properties
    • Changing the Membrane Potential
    • Introduction to Resistance
    • Introduction to Capacitance
    • Current and Ohm’s Law
    • Resistance in the Neuron
    • Membrane Capacitance
    • Lesson 2: Conclusion
    • (Extras!) The Warren Anatomical Museum
  • Lesson 3: The Action Potential
    • Introduction: The Action Potential
    • Fundamentals of the Action Potential
    • Voltage-Gated Channels
    • The Phases of the Action Potential
    • Channels and Probability
    • Channel Kinetics
    • The Currents Behind the Action Potential
    • Lesson 3: Conclusion
    • (Extras!) Field Trip: Neurotoxins at the Aquarium
    • (Extras!) Field Trip: Electroreception
  • Lesson 4: Action Potential Propagation
    • Introduction: Action Potential Propagation
    • Signals in the Nervous System
    • Electrical Signalling
    • Signals as State
    • Getting from Point A to Point B
    • Speeding Up the Action Potential
    • Giant Axons
    • Myelinated Axons
    • Myelination I
    • Myelination II
    • Lesson 4: Conclusion
    • (Extras!) Sheep Brain Dissection
  • Do-It-Yourself Labs (optional)
    • Introduction to DIY Labs
    • Recording and Stimulating a Nerve
    • Rate Coding
    • Electrode Referencing
    • Neuropharmacology
    • The Electromyograph
    • Grasshopper Vision
  • Final Exam

Part 2: The Electrical Properties of the Neuron

Fundamentals of Neuroscience, Part 2: Neurons and Networks

  • Lesson 1: The Synapse
    • Introduction to Lesson 1
    • Synapses: Overview
    • Basics of Synaptic Transmission
    • Anatomy of the Synapse
    • The Presynaptic Terminal
    • Visualizing the Synapse
    • SNAREs
    • Lesson 1 Conclusion
  • Lesson 2: Excitation and Inhibition
    • Introduction to Lesson 2
    • Excitation and Inhibition Overview
    • Life of a Neurotransmitter
    • EPSPs and IPSPs
    • EPSPs in Depth
    • Acetylcholine Receptors In Depth
    • Excitation Disease States
    • Glutamate and Glutamate Receptors
    • AMPA and NMDA Receptors
    • IPSPs In Depth
    • Inhibition Disease States
    • Lesson 2 Conclusion
    • (Extra!) Tye Lab: Optogenetics
  • Lesson 3: Small Circuits
    • Introduction to Lesson 3
    • Small Circuits Overview
    • Information Processing
    • Synaptic Efficacy and Distance
    • Synaptic Summation
    • Synaptic Inhibition
    • Synaptic Temporal Summation
    • Synaptic Temporal Inhibition
    • Convergence and Divergence
    • Central Pattern Generators
    • Lesson 3 Conclusion
    • (Extra!) Connectomics: Discussion with Prof. Jeff Lichtman
  • Lesson 4: Neuromodulation
    • Introduction to Lesson 4
    • What is Neuromodulation?
    • Processes of Neuromodulation
    • Ionotropic Receptors
    • Metabotropic Receptors
    • The Serotonin System
    • Neuropeptides
    • The Dopamine System
    • The Cholinergic System
    • The Noradrenaline System
    • Lesson 4 Conclusion
    • (Extra!) Deep Brain Stimulation
    • (Extra!) Susan's Brain - The Science of Addiction
  • Lesson 5: Neuronal Plasticity
    • Introduction to Lesson 5
    • Introduction to Plasticity
    • Short-Term Plasticity and Adaptation
    • LTP and LTD
    • Hebb's Rule and Associative Learning
    • LTP in Depth
    • LTD in Depth
    • Spike Timing Dependent Plasticity
    • Nonsynaptic Plasticity
    • Lesson 5: Conclusion
    • (Extra!) MDMA-Assisted Psychotherapy
  • Final Exam

Part 3: The Brain

Fundamentals of Neuroscience, Part 3: The Brain

  • Lesson 1: Vision
    • Introduction to Lesson 1
    • Lesson 1 Highlights
    • The Properties of Vision
    • The Nature of Light
    • The Eye
    • Phototransduction
    • The Dress
    • Color Vision
    • Retinal Processing
    • The Retinal Circuit
    • The Retinofugal Projection
    • The Lateral Geniculate Nucleus
    • Primary Visual Cortex (V1)
    • The Physiology of Area V1
    • Visual Pathways
    • Lesions of the Visual Cortex
    • Review of Pathways and the Binding Problem
    • Interactive Diagram: The Eye
    • Interactive Diagram: Visual Processing
    • (Extra!) Anatomy of the Visual System
    • (Extra!) The Poetry of Perception
    • (Extra!) Neuroscience of Color
    • (Extra!) Neuroscience of Art
  • Lesson 2: Audition
    • Introduction to Lesson 2
    • Lesson 2 Highlights
    • The Nature of Sound
    • Auditory Anatomy
    • Conduction Deafness
    • The Inner Ear
    • Physiology of the Cochlea
    • Frequency Detection
    • Sensorineural Hearing Loss
    • Subcortical Auditory Pathways
    • Auditory Cortex
    • Localizing Sound
    • Interactive Diagram: Audition
    • (Extra!) Anatomy of the Auditory System
    • (Extra!) The Poetry of Perception
    • (Extra!) Split the lark
    • (Extra!) Song of myself
  • Lesson 3: Smell, Taste, and the Remaining Senses
    • Introduction to Lesson 3
    • Lesson 3 Highlights
    • Gustation: Receptors
    • Gustation: Perception
    • Interactive Diagram: Gustation
    • Olfaction: Receptors
    • Olfactory Pathways
    • Interactive Diagram: Olfaction
    • Somatosensory Receptors
    • Somatosensory Processing
    • Interactive Diagram: Somatosensation
    • Sensation in the Animal Kingdom
    • Super Senses
    • (Extra!) Anatomy of the Olfactory System
    • (Extra!) Anatomy of the Gustatory System
    • (Extra!) Poetry of Perception
    • (Extra!) Song of Myself
    • (Extra!) I taste a liquor never brewed
    • (Extra!) Smell!
  • Lesson 4: Movement & Action
    • Introduction to Lesson 4
    • Lesson 4 Highlights
    • Muscles
    • Skeletal Muscles
    • Lower Motor Neurons
    • Intrinsic Spinal Circuits
    • Central Pattern Generators
    • Brain Control of Movement
    • Upper Motor Neurons
    • Corticospinal Neurons
    • Motor Control Hierarchy
    • Lesions of Motor Cortex
    • Interactive Diagram: Movement & Action
    • (Extra!) Anatomy of the Motor System
    • (Extra!) Poetry of Perception
  • Lesson 5: Subcortical Brain Areas
    • Introduction to Lesson 5
    • Lesson 5 Highlights
    • The Hindbrain
    • The Midbrain
    • The Cerebellum
    • The Forebrain
    • The Basal Ganglia
    • The Thalamus
    • The Limbic System
    • The Hippocampus
    • The Hypothalamus
    • Interactive Diagram: Subcortical Brain Regions
  • Final Exam