/INSIGHT

Primary LanguageR

INSIGHT

This repository contains the code and data used in the paper

Wu, Q., Suo, C., Brown, T., Wang, T., Teichmann, S. A. and Bassett, A. R. (2020+) INSIGHT: a population scale COVID-19 testing strategy combining point-of-care diagnosis with centralised high-throughput sequencing. doi: 10.1101/2020.06.01.127019

Main files:

  • code/barcode_hopping_modelling.R contains the code used to analyse sequencing results and model barcode hopping
  • code/figures.R contains the code used to generate all figures in the paper
  • code/hamming.py contains the code to generate barcodes separated by any given Hamming distance. See Supplementary Note 1 of the above referenced paper for more details.
  • code/LoD.R contains the code used to compute LoD-95 of the INSIGHT testing technology