Pinned Repositories
bacteria-ID
Source code and demos for "Rapid identification of pathogenic bacteria using Raman spectroscopy and deep learning"
Beautiful-Visualization-with-R
《R语言数据可视化之美》配套代码
breseq
breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a command line tool implemented in C++ and R. More information at
Community-assembly-processes-and-species-coexistences-of-agricultural-soils-microbiome
dada2
Accurate sample inference from amplicon data with single nucleotide resolution
Ecology_hanxingguo
Codes and data for my ecological paper.
Evolution
An Isotope-Labeled Single-Cell Raman Spectroscopy Approach for Tracking the Physiological Evolution Trajectory of Bacteria toward Antibiotic Resistance
Example-Raman-spectral-analysis
General data analysis workflow for Raman spectra according to the manuscript 'Tutorial on Chemometric Analysis in Raman Spectroscopy: from Experimental Design to Machine Learning based Modelling'
FEAST
Fast expectation maximization for microbial source tracking
Virome_of_agricultural_soils
Analysis of metagenomes and viromes from agricultural soils amended with organic or chemical fertilizers for over ten years
superahura's Repositories
superahura/Virome_of_agricultural_soils
Analysis of metagenomes and viromes from agricultural soils amended with organic or chemical fertilizers for over ten years
superahura/bacteria-ID
Source code and demos for "Rapid identification of pathogenic bacteria using Raman spectroscopy and deep learning"
superahura/Beautiful-Visualization-with-R
《R语言数据可视化之美》配套代码
superahura/breseq
breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a command line tool implemented in C++ and R. More information at
superahura/Community-assembly-processes-and-species-coexistences-of-agricultural-soils-microbiome
superahura/dada2
Accurate sample inference from amplicon data with single nucleotide resolution
superahura/Ecology_hanxingguo
Codes and data for my ecological paper.
superahura/Evolution
An Isotope-Labeled Single-Cell Raman Spectroscopy Approach for Tracking the Physiological Evolution Trajectory of Bacteria toward Antibiotic Resistance
superahura/Example-Raman-spectral-analysis
General data analysis workflow for Raman spectra according to the manuscript 'Tutorial on Chemometric Analysis in Raman Spectroscopy: from Experimental Design to Machine Learning based Modelling'
superahura/FEAST
Fast expectation maximization for microbial source tracking
superahura/gongyanhai_RamanD2O
superahura/irootlab
Inovative toolbox for biospectroscopy in MATLAB
superahura/Liyu
superahura/NetMoss2
superahura/NQBMatlab
Matlab useful functions and projects
superahura/NST
Normalized Stochasticity Ratio in community assembly
superahura/NWU-Spectra-Analysis-Toolbox
superahura/Phage-and-Antibiotic-combination
superahura/population_airway_microbiome
This repository contains original codes for major analyses in the manuscript 'The multi-kingdom airway microbiome mediates the interaction between environmental exposure and respiratory health'.
superahura/Resistome-on-Plastisphere
superahura/single-bacterium-transcriptome-profiling
Bioinformatics workflow to analyze single bacterium RNA-seq data
superahura/sourcetracker
superahura/SpatioTemporalViromes
superahura/Stochastic-assembly-of-river-microeukaryotes
superahura/umap
Uniform Manifold Approximation and Projection
superahura/Virome
superahura/warming-network-complexity-stability
Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"
superahura/warming_soil_biodiversity
superahura/win-executable
This repository contains the executable file for installation on a windows 10 PC