Pinned Repositories
acheron
Machine learning platform for bacterial genome sequence analysis
AMR_Predictor
Machine learning methods to predict the anti-microbial resistance of Salmonella.
docker-flask-conda
Fork adds support for Conda
ecoliHostPredictor
Uses machine learning to predict the host given an ecoli genome
gamechanger
insilico-subtyping
Phylotyper: Predicting subtypes from WGS using phylogenetic trees and ancestral reconstruction
kmer
Using machine learning to predict E. coli phenotypes
phenores
Predicting bacterial AMR phenotypes from genotypes
semantic
SuperPhy for the semantic web
spfy
Spfy: an integrated graph database for real-time prediction of Escherichia coli phenotypes and downstream comparative analyses
superphy's Repositories
superphy/spfy
Spfy: an integrated graph database for real-time prediction of Escherichia coli phenotypes and downstream comparative analyses
superphy/AMR_Predictor
Machine learning methods to predict the anti-microbial resistance of Salmonella.
superphy/docker-flask-conda
Fork adds support for Conda
superphy/acheron
Machine learning platform for bacterial genome sequence analysis
superphy/ecoliHostPredictor
Uses machine learning to predict the host given an ecoli genome
superphy/kmer
Using machine learning to predict E. coli phenotypes
superphy/phenores
Predicting bacterial AMR phenotypes from genotypes
superphy/host_predict
superphy/ont-nextflow
superphy/prairiedog
next-gen pangenome graphs for predictive genomics
superphy/prairiedog_go
probability emitting pangenome graphs
superphy/ashlynn-prop
superphy/Brucella
superphy/Brucella_Pipeline
A pipeline for the identification of unique nucleotide markes across species of Brucella
superphy/Brucella_Project_Preliminary
superphy/dgraph
Fast, Distributed Graph DB
superphy/diffpool
superphy/docker-blazegraph
Run Blazegraph in Docker
superphy/docker-tox-base
Docker base image for running tox with Python 2.6, 2.7, 3.3, 3.4, 3.5, 3.6, 3.7, PyPy, and PyPy3.
superphy/dockerfile-wizard
Use CircleCI to build custom Docker images with combinations of common languages/dependencies
superphy/enterobase_downloader
python script that downloads all the genomes from enterobase
superphy/fasta_cleaner
For cleaning fasta files
superphy/gobin
superphy/grouch
Front-end for superphy/spfy. Support submission of analysis tasks
superphy/lemongraph
Log-based transactional graph engine
superphy/manuamr
Paper for MIC prediction in Salmonella
superphy/Pans_Labyrinth
superphy/paper_platform
Paper describing the platform architecture / functionality for the semantic web
superphy/Proposal
superphy/sequann
Link and store annotations like Blast, Resfams, RGI to genome sequences for quick lookup