/local-NEB

Image analysis tools and sample datasets to accompany the paper 'Closed mitosis requires local disassembly of the nuclear envelope'

Primary LanguageJupyter NotebookMIT LicenseMIT

Image analysis for S. pombe cell division

This repository contains code used for image analysis of S. pombe cells where nuclear envelope components are fluorescently-labelled. Below is a brief description of the different methods available here - if you think something might be useful for your data, obviously feel free to play with the code yourself, but also don't hesitate to contact me (Siân - sian.culley@kcl.ac.uk) if you have a specific application :)

Any questions on sample preparation and imaging, please contact Gautam (g.dey@ucl.ac.uk)!

Documentation is a work in progress, but there is a release with the compiled Fiji plugins file and test data available in the 'Releases' tab.