Analyzing SNPs in metagenomes
Anchurus was the son of king Midas of ancient Greece. The repository is named afer him because the metagenomic SNPs are obtained through MIDAS
- analyze_midas: This directory contains code for analysis after midas has been used to call SNPs.
- mktest: This directory contains code to perform the McDonald-Kreitman test on gene frequencies, between two groups.
- run_midas: This directory contains wrappers to run midas on a series of samples. It requires that there are two files per sample corresponding to Illumina forward and reverse reads. Wrappers are nextflow pipelines.
- vmwa: This directory contains code for testing association between genetic variants of bacteria and a host phenotype.
(C) Copyright 2018 Sur Herrera Paredes
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