surh/HMVAR

Issues

• Ka/Ks functions

  #21 opened 6 years ago by surh
  1

• remove bimbam imputation

  #36 opened 5 years ago by surh
  0

• Fst calculation

  #33 opened 5 years ago by surh
  2

• Use GO.db to annotate each gene with the offspring of its GO terms

  #30 opened 5 years ago by surh
  0

• sign test

  #19 opened 5 years ago by surh
  2

• Optimize gsea to completeley skip terms below min_size

  #32 opened 5 years ago by surh
  0

• Homogenize sign_test column names with other enrichment functions

  #31 opened 5 years ago by surh
  0

• Functional test enrichment functions

  #14 opened 5 years ago by surh
  2

• Create functional_enrichment.r exectuable

  #15 opened 5 years ago by surh
  3

• read_eggnog function

  #17 opened 5 years ago by surh
  1

• gsea binding of results changes p-values

  #29 opened 5 years ago by surh
  2

• Incorporate GO ontology structure

  #16 opened 5 years ago by surh
  1

• Gene set enrichment analysis

  #18 opened 5 years ago by surh
  1

• DoS function

  #11 opened 5 years ago by surh
  2

• Create dos.r executatble

  #12 opened 5 years ago by surh
  1

• Add genes option to dos functions

  #28 opened 5 years ago by surh
  0

• Eliminate AMOR dependency

  #13 opened 5 years ago by surh
  1

• unit testing for varsites_pipeline

  #27 opened 5 years ago by surh
  0

• Create manhattan_plot function

  #10 opened 5 years ago by surh
  1

• Track internal testing

  #23 opened 6 years ago by surh
  2

• Automate build testing

  #24 opened 6 years ago by surh
  2

• Number of variable/fixed sites

  #4 opened 6 years ago by surh
  2

• Have determine_substitution_type return a factor

  #26 opened 6 years ago by surh
  0

• Incorrect assignment of allele when MAF=0.5

  #1 opened 6 years ago by surh
  2

• Register in Zenodo

  #22 opened 6 years ago by surh
  1

• Unit testing

  #25 opened 6 years ago by surh
  1

• test data

  #6 opened 6 years ago by surh
  1

• Correlation between different tests

  #2 opened 6 years ago by surh
  1

• imputation needs bechmarking

  #9 opened 6 years ago by surh
  0

• plot_genes executable

  #5 opened 6 years ago by surh
  0

• Basic usage vignette

  #20 opened 6 years ago by surh
  0

• read_midas_data always eliminates non CDS snps

  #7 opened 6 years ago by surh
  1

• Imputation via BIMBA fails

  #8 opened 6 years ago by surh
  1

• Executable to select a subset of genes from a genome

  #3 opened 6 years ago by surh
  1