/LNCDschedule

Primary LanguagePython

LNCD scheduler (DB management)

Build Status

Schedule and record visits to the Laboratory of NeuroCognitive Development.

This is unlikely to be too useful to the world at large. Integrations are specific to the lab's tools (gcal, qualtrics) and firewall. The database schema is tied to internal organization of multimodal experiments with human participates.

Instead see components:

Run without install

  • Mobaxterm/ssh: rhea
  • schedule.py

Install on windows

  • python: https://www.anaconda.com/download/#windows (install as user, not system)
  • python libaries/dependencies:anaconda navigator -> environments -> root play -> terminal
    • upmc cert issue: conda config --set ssl_verify False
    • version control: conda install git
    • LNCDcal: pip install --trusted-host github.com git+https://github.com/LabNeuroCogDevel/LNCDcal.py
    • sql: conda install psycopg2 pip install pyesql
    • gui: conda install pyQt5
  • app:
    • anaconda navigator -> projects -> import -> from folder

20190712 - pyqt5 update issue, current fix pip install pyqt5==5.12.2 pyinstaller/pyinstaller#4293

Not tracked (copy)

  • config.ini configuration settings (db info, cal info)
  • *.p12 gcal cred file for service account

Editing

  • qtcreator for visual ui files (designer.exe with anaconda on windows)

Notes

Testing

use make test, same as python3 -m pytest

  • Depends on pytest, pytest-qt and pytest-pgsql
  • within tests directory, but expects to be run at root directory (./sql/ and ./*py files)
  • makes use of pytest autoloaded conftest.py to provided schema loading through shared test fixture create_db

using git hooks

  • install: ln -s $(pwd)/hooks/pre-commit .git/hooks/pre-commit
  • ignore: git commit --no-verify ...

Database

Explore with DBeaver.

The database is built elsewhere. Insert and update triggers exist here ~/src/db/mdb_psql_clj/resources/sql/triggers.sql and the schema is defined here ~/src/db/mdb_psql_clj/resources/sql/makedb.sql

These are mirrored in the sql/ directory.

Visit has some confusing views:

  • visits_view : json columns full info for visit, no drop info
  • visits_summary: most recent note (+ drop values) and action