suwangbio

Pinned Repositories

BETA
Binding and Expression Target Analysis pipeline
Language:Python1 2 20
bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell0 2 00
deepTools
Tools to process and analyze deep sequencing data.
Language:Python0 2 00
GiniClust
GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index
Language:R0 2 00
HiC_pipeline
A user-friendly Hi-C data processing software based on hiclib
Language:Python0 2 00
HiNT
HiC for copy Number variation and Translocation detection
Language:Python0 1 00
hint-sv-explorer
Language:JavaScript0 6 00
iced
Normalizing Hi-C contact counts efficiently
Language:Python0 2 00
long-rna-seq-pipeline
STAR based ENCODE Long RNA-Seq processing pipeline
Language:Python0 2 00
MARGE
MARGE:Model-based Analysis of Regulation of Gene Expression
Language:Python1 3 00

suwangbio's Repositories

suwangbio/BETA
Binding and Expression Target Analysis pipeline
Language:Python1 2 20
suwangbio/MARGE
MARGE:Model-based Analysis of Regulation of Gene Expression
Language:Python1 3 00
suwangbio/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell0 2 00
suwangbio/deepTools
Tools to process and analyze deep sequencing data.
Language:Python0 2 00
suwangbio/GiniClust
GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index
Language:R0 2 00
suwangbio/HiC_pipeline
A user-friendly Hi-C data processing software based on hiclib
Language:Python0 2 00
suwangbio/HiNT
HiC for copy Number variation and Translocation detection
Language:Python0 1 00
suwangbio/hint-sv-explorer
Language:JavaScript0 6 00
suwangbio/iced
Normalizing Hi-C contact counts efficiently
Language:Python0 2 00
suwangbio/long-rna-seq-pipeline
STAR based ENCODE Long RNA-Seq processing pipeline
Language:Python0 2 00
suwangbio/MARGE_py2
MARGE:Model-based Analysis of Regulation of Gene Expression (for python2)
Language:Python2 0
suwangbio/MARGE_py3
MARGE:Model-based Analysis of Regulation of Gene Expression (for python3)
Language:Python
suwangbio/TADbit
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
Language:Python2 0