suzhanhao

suzhanhao's Stars

• changwn/scFEA

  single cell Flux Estimation Analysis (scFEA) Try the below web server!

  Language:Jupyter Notebook9733

• SysBioChalmers/RAVEN

  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

  Language:MATLAB10152

• opencobra/cobrapy

  COBRApy is a package for constraint-based modeling of metabolic networks.

  Language:Python463217

• SysBioChalmers/Human-GEM

  The generic genome-scale metabolic model of Homo sapiens

  Language:MATLAB9841

• cfoguet/cobrafunctions

  Language:Python21

• franciscozorrilla/metaGEM

  :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

  Language:Python20042

• f/awesome-chatgpt-prompts

  This repo includes ChatGPT prompt curation to use ChatGPT better.

  Language:HTML112k15.3k

• wu-yc/scMetabolism

  Quantifying metabolism activity at the single-cell resolution

  Language:R11347

• liulab-dfci/MAESTRO

  Single-cell Transcriptome and Regulome Analysis Pipeline

  Language:C27777

• grst/rstudio-server-conda

  Run Rstudio Server in a conda environment

  Language:Shell23148

• gto76/python-cheatsheet

  Comprehensive Python Cheatsheet

  Language:Python36.4k6.5k

• scverse/scvi-tools

  Deep probabilistic analysis of single-cell and spatial omics data

  Language:Python1.2k350

• pyro-ppl/numpyro

  Probabilistic programming with NumPy powered by JAX for autograd and JIT compilation to GPU/TPU/CPU.

  Language:Python2.2k239

• ksachdeva/rethinking-tensorflow-probability

  Statistical Rethinking (2nd Ed) with Tensorflow Probability

  Language:Jupyter Notebook26949

• bbolker/mixedmodels-misc

  miscellaneous materials for mixed models, mostly in R

  Language:HTML14040

• google-deepmind/alphafold

  Open source code for AlphaFold.

  Language:Python12.7k2.3k

• ihmeuw/lbd

  Local Burden of Disease

  3811

• echonet/dynamic

  EchoNet-Dynamic is a deep learning model for assessing cardiac function in echocardiogram videos.

  Language:Python470165

• greenelab/tybalt

  Training and evaluating a variational autoencoder for pan-cancer gene expression data

  Language:HTML16462

• welch-lab/liger

  R package for integrating and analyzing multiple single-cell datasets

  Language:R38978

• youyanggu/yyg-seir-simulator

  Underlying SEIR simulator for the YYG / covid19-projections.com model

  Language:Python20361

• m-clark/mixedup

  An R package for extracting results from mixed models that are easy to use and viable for presentation.

  Language:R672

• theislab/Covid_meta_analysis

  Analysis notebooks for the Covid-19 meta analysis that accompanies the Nature Medicine publication "Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics"

  Language:Jupyter Notebook2411

• paulamartingonzalez/Targeted_Literature_Reviews_via_webscraping

  Web scraping to get articles for a given query. It returns an spreadsheet with titles, abstracts, doi and references of the article

  Language:Jupyter Notebook11440

• microsoft/PowerToys

  Windows system utilities to maximize productivity

  Language:C#111k6.5k

• luoyuanlab/autism_precision_medicine

  Nature Medicine paper. A Multidimensional Precision Medicine Approach for Autism Subtype Identification.

  Language:Shell118

• cartal/HCA_Heart

  This is the official repository for the Human Cell Atlas Heart project.

  Language:Jupyter Notebook2817

• wilfredinni/python-cheatsheet

  All-inclusive Python cheatsheet

  Language:Vue4.3k1.3k

• snakemake-workflows/docs

  Documentation of the Snakemake-Workflows project

  15225

• randy3k/radian

  A 21 century R console

  Language:Python2k75