svalqui

svalqui's Stars

• seandavi/awesome-single-cell

  Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

  3.1k961

• scverse/scanpy

  Single-cell analysis in Python. Scales to >1M cells.

  Language:Python1.9k595

• allenai/scispacy

  A full spaCy pipeline and models for scientific/biomedical documents.

  Language:Python1.7k225

• galaxyproject/galaxy

  Data intensive science for everyone.

  Language:Python1.4k992

• hail-is/hail

  Cloud-native genomic dataframes and batch computing

  Language:Python965242

• broadinstitute/picard

  A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

  Language:Java965367

• broadinstitute/gatk

  Official code repository for GATK versions 4 and up

  Language:Java1.7k587

• igvteam/igv

  Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

  Language:Java632379

• biopython/biopython

  Official git repository for Biopython (originally converted from CVS)

  Language:Python4.3k1.7k

• ansible/ansible-modules-core

  Ansible modules - these modules ship with ansible

  Language:Python1.3k1.9k

• ansible/ansible

  Ansible is a radically simple IT automation platform that makes your applications and systems easier to deploy and maintain. Automate everything from code deployment to network configuration to cloud management, in a language that approaches plain English, using SSH, with no agents to install on remote systems. https://docs.ansible.com.

  Language:Python62.3k23.8k

• napalm-automation/napalm

  Network Automation and Programmability Abstraction Layer with Multivendor support

  Language:Python2.2k549