sven1103
Team leader IT infrastructure and software development at the Quantitative Biology Center, University of Tübingen. Young apprentice of Clean Architecture.
QBiC @qbicsoftware Tübingen, Germany
Pinned Repositories
data-manager-app
A web-based life science omics and imaging data management solution
data-scanner
QBiC's post-upload server-side logic to prepare datasets for registration
advanced-java-bioinformatics
Module Advanced Java Programming in Bioinformatics - Prof. Daniel Huson
best-classification-comparison
bioinfo2-project
Bioinformatic project - secondary structure annotation
concurrency-exercises
Some exercises to learn how to do concurrent programming with Java.
configs
Config files used to define parameters specific to compute environments at different Institutions.
cookiecutter
Template for your own top-end Nextflow pipeline, customised using Cookiecutter
simple-httpserver-cli
A super simple jetty HTTP server with Spark framework, that just prints incoming HTTP POST requests.
smarthome
A small webapp build with Vaadin accessing your Zigbee devices via MQTT.
sven1103's Repositories
sven1103/simple-httpserver-cli
A super simple jetty HTTP server with Spark framework, that just prints incoming HTTP POST requests.
sven1103/cookiecutter
Template for your own top-end Nextflow pipeline, customised using Cookiecutter
sven1103/concurrency-exercises
Some exercises to learn how to do concurrent programming with Java.
sven1103/configs
Config files used to define parameters specific to compute environments at different Institutions.
sven1103/smarthome
A small webapp build with Vaadin accessing your Zigbee devices via MQTT.
sven1103/effective-java
Exercises to Bloch's Effective Java Items
sven1103/gitflow-example
An example project to display the Gitflow workflow.
sven1103/github-pages-playground
Experimenting with Github pages and integrations
sven1103/go
Playground for goland language
sven1103/hlatyping
Precision HLA typing from next-generation sequencing data
sven1103/ICGC-featureCounts
WIP: A Nextflow pipeline to run featureCounts on RNAseq BAM files on ICGC in AWS/AWS Batch
sven1103/kotlin-playground
Exploration of Kotlin programming language
sven1103/methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
sven1103/nextflow
A DSL for data-driven computational pipelines
sven1103/nf-co.re
Files for the main nf-core website >>>
sven1103/nf-core.github.io
Documentation website for the nf-core community
sven1103/nf-registry-microservice
A microservice consuming JSON objects emitted by Nextflows weblog feature and puts it into a DB.
sven1103/NGI-RNAseq
Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
sven1103/openbis-client-lib
sven1103/presentations
NIH BYOB Presentation Materials
sven1103/rename-files
sven1103/simple-server-api
A simple Spark web-server, that can be used for API development
sven1103/slack-invite-automation
A tiny web application to invite a user into your slack team.
sven1103/socketio-playground
A socket.io playground repository.
sven1103/softview
Track your dependency flow.
sven1103/sven1103
My GitHub profile
sven1103/template-playground
Test repo for nf-core robot
sven1103/tools
Python package with helper tools for the nf-core community.
sven1103/toy-repo
A repo where I try out new stuff
sven1103/workflow-setup-wizard
Consumes a Nextflow workflow parameter metadata JSON and provides a model to query these.