sven1103
Team leader IT infrastructure and software development at the Quantitative Biology Center, University of Tübingen. Young apprentice of Clean Architecture.
QBiC @qbicsoftware Tübingen, Germany
Pinned Repositories
tools
Python package with helper tools for the nf-core community.
data-manager-app
A web-based life science omics and imaging data management solution
offer-manager-2-portlet
The offer manager assists in creating offers with version control and person master data handling.
postman-cli
A client software for dataset request and download from openBIS
rmageddon-cli
A small linting command line tool for R container evaluation
sample-tracking-service
Service that implements a sample tracking interface.
advanced-java-bioinformatics
Module Advanced Java Programming in Bioinformatics - Prof. Daniel Huson
best-classification-comparison
cookiecutter
Template for your own top-end Nextflow pipeline, customised using Cookiecutter
simple-httpserver-cli
A super simple jetty HTTP server with Spark framework, that just prints incoming HTTP POST requests.
sven1103's Repositories
sven1103/simple-httpserver-cli
A super simple jetty HTTP server with Spark framework, that just prints incoming HTTP POST requests.
sven1103/cookiecutter
Template for your own top-end Nextflow pipeline, customised using Cookiecutter
sven1103/concurrency-exercises
Some exercises to learn how to do concurrent programming with Java.
sven1103/configs
Config files used to define parameters specific to compute environments at different Institutions.
sven1103/effective-java
Exercises to Bloch's Effective Java Items
sven1103/etl-scripts
openbis etl scripts
sven1103/gitflow-example
An example project to display the Gitflow workflow.
sven1103/github-pages-playground
Experimenting with Github pages and integrations
sven1103/hlatyping
Precision HLA typing from next-generation sequencing data
sven1103/ICGC-featureCounts
WIP: A Nextflow pipeline to run featureCounts on RNAseq BAM files on ICGC in AWS/AWS Batch
sven1103/kotlin-playground
Exploration of Kotlin programming language
sven1103/logos
contains logos for nf-core
sven1103/methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
sven1103/nextflow
A DSL for data-driven computational pipelines
sven1103/nf-co.re
Files for the main nf-core website >>>
sven1103/nf-core.github.io
Documentation website for the nf-core community
sven1103/nf-registry-microservice
A microservice consuming JSON objects emitted by Nextflows weblog feature and puts it into a DB.
sven1103/NGI-RNAseq
Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
sven1103/openbis-client-lib
sven1103/presentations
NIH BYOB Presentation Materials
sven1103/rename-files
sven1103/simple-server-api
A simple Spark web-server, that can be used for API development
sven1103/slack-invite-automation
A tiny web application to invite a user into your slack team.
sven1103/socketio-playground
A socket.io playground repository.
sven1103/softview
Track your dependency flow.
sven1103/sven1103
My GitHub profile
sven1103/template-playground
Test repo for nf-core robot
sven1103/tools
Python package with helper tools for the nf-core community.
sven1103/toy-repo
A repo where I try out new stuff
sven1103/workflow-setup-wizard
Consumes a Nextflow workflow parameter metadata JSON and provides a model to query these.