Pinned Repositories
1st-workflow-cwl
Copy of 1st-workflow from dockstore integration testing!
actions-test
bcc2020-training
Training materials for our BCC 2020 training workshop.
bh20-seq-resource
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
bio-cwl-tools
CWL CommandLineTool descriptions for biology/life-sciences related applications
BioDivGenomics
Broad-Best-Practice-Data-pre-processing-CWL1.0-workflow
The Broad Best Practice Data Pre-processing Workflow 4.1.0.0 is used to prepare data for variant calling analysis
cumulus
cwl-prop-sbg
cwl-relative-paths
svonworl's Repositories
svonworl/test_notebook
svonworl/links-and-modules
svonworl/large-sourcefiles
svonworl/sourcefile-testing
svonworl/terra-fw-notebooks
A repo for Terra Featured Workspace Notebooks owned and maintained by DSP Customer Delivery
svonworl/simple-notebook
svonworl/galaxy
Data intensive science for everyone.
svonworl/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
svonworl/cwltool
Common Workflow Language reference implementation
svonworl/test-notebooks
svonworl/bcc2020-training
Training materials for our BCC 2020 training workshop.
svonworl/multi-entry
A Dockstore repo with two tools, two workflows, and a .dockstore.yml. All entries on the main branch will register successfully, other branches generally tweak the repo to test different failure conditions.
svonworl/goleft-wdl
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svonworl/vcfToGds
Convert Vcf files to Gds format
svonworl/micrograd
A tiny scalar-valued autograd engine and a neural net library on top of it with PyTorch-like API
svonworl/test-service
svonworl/simple-apptool
svonworl/grepc
A tool to determine how many lines in the input match a pattern.
svonworl/eq-notebook
a notebook with equations
svonworl/testy
svonworl/tool-registry-service-schemas
APIs for discovering genomics tools, their metadata and their containers
svonworl/nextflow-broken
svonworl/recursive-wdl
svonworl/actions-test
svonworl/cwl-relative-paths
svonworl/OxoG-Dockstore-Tools
A CWL version of the Seqware OxoG workflow. This repository also contains scripts and dockerfiles used by the stand-alone versions of these components.
svonworl/bio-cwl-tools
CWL CommandLineTool descriptions for biology/life-sciences related applications
svonworl/notebookjs
Render Jupyter/IPython notebooks on the fly, in the browser. (Or on the command line, if you'd like.)
svonworl/bh20-seq-resource
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
svonworl/galaxy-example