Pinned Repositories
bakta
Rapid & standardized annotation of bacterial genomes & plasmids
cyp51_PacBio
PacBio reads analysis and SNP calling workflow for cyp51
Distinct_sequences
Distinct_sequence_generator
Example_ANNOTATION_Scripts
Parse and annotate WGS samples
Genome_annotation
These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to follw
gvs.github.io
Test web
MACARON
Multi-bAse Codon-Associated variant Re-annotatiON
MACARON-GenMed-LabEx
Multi-bAse Codon-Associated variant Re-annotatiON (MACARON)
MetaXcan
MetaXcan software and manuscript
Whole-Exome-Sequencing-scripts
svsgvarma's Repositories
svsgvarma/Whole-Exome-Sequencing-scripts
svsgvarma/Example_ANNOTATION_Scripts
Parse and annotate WGS samples
svsgvarma/bakta
Rapid & standardized annotation of bacterial genomes & plasmids
svsgvarma/cyp51_PacBio
PacBio reads analysis and SNP calling workflow for cyp51
svsgvarma/Distinct_sequences
Distinct_sequence_generator
svsgvarma/Genome_annotation
These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to follw
svsgvarma/gvs.github.io
Test web
svsgvarma/MACARON
Multi-bAse Codon-Associated variant Re-annotatiON
svsgvarma/MACARON-GenMed-LabEx
Multi-bAse Codon-Associated variant Re-annotatiON (MACARON)
svsgvarma/MetaXcan
MetaXcan software and manuscript
svsgvarma/Parsing-BEDfiles-for-UCSCbrowser
svsgvarma/patternCNV
a versatile tool for detecting copy number changes from exome-seq data
svsgvarma/proj_nordic7k-chip
workflow for parsing nordic7k-chip data and blast reads to reference genome
svsgvarma/qtl2data
Example data for R/qtl2
svsgvarma/RGDB
Resistance Gene Data base Web-server (RGDB_Webserver)
svsgvarma/RNAseq
svsgvarma/RNAseq_Quinoa-seed
Transcriptional regulation of quinoa seed quality
svsgvarma/scripts_barley
svsgvarma/scripts_benth
svsgvarma/Transcriptomics
svsgvarma/WholeGenomeSequencing_Repeat-Mask-Annotation
Scripts to filter False Negatives of variants with in the repeat-masking region, and to add gene expression annotations data