All issues

[swvanderlaan]

Things to do for future versions

☑️ implemented
❌ skipped
🚧 working on it
🔶 next version, high priority
🔷 next version, low priority

Scripts

• add script to check for dependencies 🔶
• workflows for installing PLINK2, VEGAS2 and MAGMA properly 🔷
• add in HapMap2 as reference (VEGAS2 only) 🔷
• add in download and parsing script for reference to enable per-chromosome analyses 🔷
• add in VEGAS2 based pathway enrichment analysis 🚧
• extent resource script with download of functional elements, to facilitate the analysis of transcription binding sites, or active enhancers, etc. 🔶

Plotting

• add (option) to plot results in a Manhattan 🔶
• add (option) to plot results in a QQ-plot 🔶
• add gene-names based on a threshold to Manhattan 🔷
• add option to plot regional plots of significant genes 🔷