Pinned Repositories
Cite
Rstudio addin to insert BibTex citation in Rmarkdown documents
detectMutations
singularity & snakemake workflow to detect mutations with several tools to detect mutations
hydroITV
Hydraulic trait inter- versus intra-specific local variability.
master-thesis-inp-template
This is the template developped for master 2 student of the FOREN lab at INP-HB, Yamoussoukro, Ivory Coast.
PhD
Personnal repository for my PhD code and documentation.
rcontroll
Package for individual-based forest growth simulator TROLL
sdmverse
sdmverse is a collaborative metapackage for listing all the metadata of the Species Distribution Modelling (SDM) packages. sdmverse includes a graphical interface available locally or online (see below). sdmverse integrates metadata from SDM packages and checks their validity against the CRAN metadata for perenity.
SSDM
Stacked Species Distribution Modelling R package
treegrowth
Variation in the growth potential of individual trees at the Paracou research station
website
My personal webpage
sylvainschmitt's Repositories
sylvainschmitt/SSDM
Stacked Species Distribution Modelling R package
sylvainschmitt/sdmverse
sdmverse is a collaborative metapackage for listing all the metadata of the Species Distribution Modelling (SDM) packages. sdmverse includes a graphical interface available locally or online (see below). sdmverse integrates metadata from SDM packages and checks their validity against the CRAN metadata for perenity.
sylvainschmitt/rcontroll
Package for individual-based forest growth simulator TROLL
sylvainschmitt/treegrowth
Variation in the growth potential of individual trees at the Paracou research station
sylvainschmitt/DownClim
Snakemake and Singularity workflow to Downscale Climate Projections
sylvainschmitt/website
My personal webpage
sylvainschmitt/genomeAnnotation
singularity & snakemake workflow to annotate genomes.
sylvainschmitt/getCordex
Get projection data from CORDEX
sylvainschmitt/microclim
microclim is a sub-project of the first article from Vincyan Badouard's PhD
sylvainschmitt/treespeciesDescriptors
Repository to develop descriptors of the environment and performance of tropical tree species in Paracou for the Camille and Sebastien analyses.
sylvainschmitt/detectMutations
singularity & snakemake workflow to detect mutations with several tools to detect mutations
sylvainschmitt/hydroITV
Hydraulic trait inter- versus intra-specific local variability.
sylvainschmitt/bayesian_workflow
sylvainschmitt/c4f_tree_allometry
sylvainschmitt/climfor
sylvainschmitt/getEra
Get climatic data from ERA5-Land on CDS using python cdsapi
sylvainschmitt/handbook
This is a personal handbook test for all my activity as a researcher at CIRAD.
sylvainschmitt/ideas
My participation into the IDEAS project. The aim is to build climate indices related to land use change in Guaviare.
sylvainschmitt/LoggingLab
Logging simulator
sylvainschmitt/regeneration
sylvainschmitt/Seminario_LoggingLab
Seminário LoggingLab apresentado em Brasília, Santarém e Manaus para o projeto FEFACCION
sylvainschmitt/singularity-cdsapi
Singularity image for Python API to access the Copernicus Climate Data Store (CDS)
sylvainschmitt/singularity-LoggingLab
R and LoggingLab package
sylvainschmitt/singularity-troll
TROLL and associated R packages Singularity container
sylvainschmitt/sylvainschmitt
sylvainschmitt/treemutation
Mutation in the tropical tree canopy
sylvainschmitt/treemutation_codes
All code for Schmitt, S., Heuret, P., Troispoux, V., Beraud, M., Cazal, J., Chancerel, É., ... & Tysklind, N. (2024). Low-frequency somatic mutations are heritable in tropical trees Dicorynia guianensis and Sextonia rubra. Proceedings of the National Academy of Sciences, 121(10), e2313312121.
sylvainschmitt/TROLL-code-fork
TROLL 4.0 is an individual- and trait-based model of forest dynamics.
sylvainschmitt/troll_eval
Evaluation of TROLL model version 4
sylvainschmitt/trollExp
singularity & snakemake workflow to run a TROLL experiment.