Pinned Repositories
MaBoSS
MaBoSS is a C++ software for simulating continuous/discrete time Markov processes, applied on a Boolean network.
NaviCell
A web tool for exploring large maps of molecular interactions
PhysiBoSS
PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
PhysiBoSSv1
Multiscale simulation of multi-cellular system
PROFILE
Repository of "Personalization of Logical Models With Multi-Omics Data Allows Clinical Stratification of Patients" paper
Roma
Representation of Module Activity
rROMA
An r interface to perform ROMA (updated version 2022)
stabilized-ica
This repository proposes a python implementation of a stabilized ICA algorithm
transmorph
Computational framework for dataset integration
WebMaBoSS
A web interface for MaBoSS modeling
Computational Systems Biology of Cancer at Institut Curie's Repositories
sysbio-curie/Neko
sysbio-curie/PhysiBoSSv1
Multiscale simulation of multi-cellular system
sysbio-curie/transmorph
Computational framework for dataset integration
sysbio-curie/NaviCell
A web tool for exploring large maps of molecular interactions
sysbio-curie/Invasion_model_PhysiBoSS
Graphical interface for the Invasion model developed with PhysiBoSS. In the "Supp_Mat" section are stored the supplementary materials for the analysis and the description of the model.
sysbio-curie/PhysiBoSS_Old
PhysiCell: Scientist end users should use latest release! Bugfixes should be submitted to the development branch.
sysbio-curie/ICA-in-Cancer-research-review-materials
sysbio-curie/multipit
Fusion strategies to build multimodal predictors for the prediction of immunotherapy response in non-small cell lung cancer
sysbio-curie/rROMA
An r interface to perform ROMA (updated version 2022)
sysbio-curie/topic_modeling_lncRNAs
sysbio-curie/MaBoSS
MaBoSS is a C++ software for simulating continuous/discrete time Markov processes, applied on a Boolean network.
sysbio-curie/NeKo_Supp_Mat
sysbio-curie/PhysiBoSS
PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
sysbio-curie/stabilized-ica
This repository proposes a python implementation of a stabilized ICA algorithm
sysbio-curie/WebMaBoSS
A web interface for MaBoSS modeling
sysbio-curie/.github
sysbio-curie/CFnetwork
Codes to reproduce the analyses and the construction of the CF signalling network.
sysbio-curie/CFnetwork_cytoscape
Repository for the cytoscape session of the CF network paper
sysbio-curie/deep-multipit
Multimodal PyTorch models with attention mechanism for the prediction of immunotherapy response in non-small cell lung cancer
sysbio-curie/rRoma_comp
Repository for the comparison of sample-wise methods for the rRoma article
sysbio-curie/tipit_benchmark_RNA
Benchmark of transcriptomic signatures for the prediction of immunotherapy response
sysbio-curie/Curie-PerMedCoE-Summer-School-2023
sysbio-curie/hpcmaboss-artifact
HPC MaBoSS artifact
sysbio-curie/Invasion_model_NeKo
This repo hosts all the notebooks and data needed to build a model of cell invasion automatically using NeKo.
sysbio-curie/KinaseSubstrateRelationship
sysbio-curie/MaBoSS.GPU
The GPU implementation of MaBoSS tool.
sysbio-curie/neko_dep
Dependencies for Neko in case pypath download manager does not work properly.
sysbio-curie/paraExaStoLog
Paralel implementation of "Exact calculator of Stochastic Logistic models"
sysbio-curie/PhysiMeSS
PhysiCell MicroEnvironment Structure Simulation
sysbio-curie/Pypath_pipeline
Automatic network construction using omnipath and pypath