syyyChen

syyyChen's Stars

• pezmaster31/bamtools

  C++ API & command-line toolkit for working with BAM data

  Language:C++416152

• broadinstitute/picard

  A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

  Language:Java979369

• fulcrumgenomics/fgbio

  Tools for working with genomic and high throughput sequencing data.

  Language:Scala31467

• Genentech/Isosceles

  The Isoforms from Single-Cell; Long-read Expression Suite

  Language:R17

• ncbi/sra-tools

  SRA Tools

  Language:C1.1k246

• lbcb-sci/racon

  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

  Language:C++20234

• nanoporetech/medaka

  Sequence correction provided by ONT Research

  Language:Python41874

• ksahlin/isONcorrect

  Error correction of ONT transcript reads

  Language:Python589

• aditya-grover/node2vec

  Language:Scala2.6k913

• jingcheng-du/Gene2vec

  Gene2Vec: Distributed Representation of Genes Based on Co-Expression

  Language:Python10527

• carmonalab/GeneNMF

  Methods to discover gene programs on single-cell data

  Language:R743

• FerryYoungFan/VirtualCockroach

  一只蟑螂桌面“宠物” Cockroach Desktop "Pet"

  Language:ActionScript49745

• curzel-it/bit-therapy

  Desktop Pets for macOS!

  Language:Swift23219

• tanaylab/metacells

  Metacells - Single-cell RNA Sequencing Analysis

  Language:Python948

• yhat/ggpy

  ggplot port for python

  Language:Python3.7k572

• mortazavilab/TranscriptClean

  Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome

  Language:Python6517

• COMBINE-lab/salmon

  🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

  Language:C++775164

• gpertea/gffcompare

  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF

  Language:C++20132

• freebayes/freebayes

  Bayesian haplotype-based genetic polymorphism discovery and genotyping.

  Language:C++784264

• nf-core/nanoseq

  Nanopore demultiplexing, QC and alignment pipeline

  Language:Nextflow17979

• nf-core/scnanoseq

  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics

  Language:Nextflow216

• conda-forge/miniforge

  A conda-forge distribution.

  Language:Shell6.4k326

• mamba-org/mamba

  The Fast Cross-Platform Package Manager

  Language:C++6.9k353

• rapidfuzz/RapidFuzz

  Rapid fuzzy string matching in Python using various string metrics

  Language:C++2.7k119

• Eugeny/tabby

  A terminal for a more modern age

  Language:TypeScript59.1k3.4k

• wdecoster/nanopack

  An overview of all nanopack tools

  Language:Python21015

• Acribbs/TallyNN

  single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)

  Language:C++133

• epi2me-labs/pychopper

  cDNA read preprocessing

  Language:Python599

• ans4013/ScisorWiz

  ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data

  Language:Python152

• shimlab/BLAZE

  SingleCell Nanopore sequencing data analysis

  Language:Python496