Pinned Repositories
bonito
Bonito - A PyTorch Basecaller for Oxford Nanopore Reads
Contact-Pro
Contact Pro
cpp_progress_bar
C++ progress bar for console applications
fairseq
Facebook AI Research Sequence-to-Sequence Toolkit written in Python.
genomics_project
joint_sc_embedding
Shape-of-Minima-of-Deep-Learning-Architectures-for-Sequence-Modelling
neural_organoid_atlas
Reproducibility repository for the Human Neural Organoid Atlas publication
single-cell-transformer-papers
privacy
:mag: Research project: Utility-preserving data privatization
szalata's Repositories
szalata/bonito
Bonito - A PyTorch Basecaller for Oxford Nanopore Reads
szalata/Contact-Pro
Contact Pro
szalata/cpp_progress_bar
C++ progress bar for console applications
szalata/fairseq
Facebook AI Research Sequence-to-Sequence Toolkit written in Python.
szalata/genomics_project
szalata/joint_sc_embedding
szalata/ntds-genetic-malaria-susceptibility
mice genetics
szalata/Shape-of-Minima-of-Deep-Learning-Architectures-for-Sequence-Modelling
szalata/KoSpeech
Open-Source Toolkit for End-to-End Korean Automatic Speech Recognition.
szalata/LaplaceAE
szalata/Laplacian_Autoencoder
Laplace Approximation for Bayesian AutoEncoder Training adapting for single-cell transcriptomics
szalata/lasr
PyTorch Lightning implementation of Automatic Speech Recognition
szalata/loss-landscapes
Approximating neural network loss landscapes in low-dimensional parameter subspaces for PyTorch
szalata/luke
LUKE -- Language Understanding with Knowledge-based Embeddings
szalata/MolCLR
Implementation of MolCLR: "Molecular Contrastive Learning of Representations via Graph Neural Networks" in PyG.
szalata/MultiMAP_rbsl
MultiMAP eval
szalata/neural_organoid_atlas
Reproducibility repository for the Human Neural Organoid Atlas publication
szalata/PyHessian
PyHessian is a Pytorch library for second-order based analysis and training of Neural Networks
szalata/scgen_vae
szalata/scvi-tools
szalata/semantic_neighborhoods
Preserving Semantic Neighborhoods for Robust Cross-modal Retrieval [ECCV 2020]
szalata/tailfindr
An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
szalata/transform-and-tell
Code for Transform and Tell paper in CVPR 2020.