szarma/Physio_Ca

Issues

• Add the possibility to analyse basic electrophysiology experiments.

  #51 opened 2 years ago by Hannnsen
  0

• Switch to pyproject.toml as proposed in PEP 518

  #50 opened 2 years ago by Hannnsen
  0

• Create the protocol file early during processing.

  #49 opened 2 years ago by Hannnsen
  0

• Environment value gets used without checking whether it exists leading to crashes in containered processing.

  #43 opened 2 years ago by Hannnsen
  0

• Processing crashes if no slack config files exist.

  #44 opened 2 years ago by Hannnsen
  0

• Checking that every peak has the same dimensions should be done by checking, whether there is only one unique value.

  #46 opened 2 years ago by Hannnsen
  0

• Property "is_3D" in regions seems to return the wrong data leading to errors in the whole islets framework.

  #47 opened 2 years ago by Hannnsen
  0

• "Examine" stops working after some time of use

  #4 opened 3 years ago by spostic
  1

• button which would start downloading a video in the "Dash"

  #3 opened 3 years ago by spostic
  2

• Add a way to easily strip experiments from existing region object.

  #42 opened 3 years ago by Hannnsen
  0

• Lowest traces of big_plot are covered by the protocols

  #41 opened 3 years ago by Hannnsen
  2

• big_plot generates overlapping selections

  #40 opened 3 years ago by Hannnsen
  2

• Protocol file does not get created after/while processing

  #39 opened 3 years ago by Hannnsen
  1

• After "mark for merging" in examiner, not all potential merges are shown.

  #38 opened 3 years ago by szarma
  0

• JSON-serialization needs serialization of types

  #28 opened 3 years ago by Hannnsen
  0

• trace scaner

  #36 opened 3 years ago by spostic
  0

• Enhancing view of single ROIs

  #15 opened 3 years ago by Hannnsen
  0

• Possible import overhead

  #17 opened 3 years ago by Hannnsen
  0

• "Fixed" install script doesn't behave like it should while running as sudo.

  #29 opened 3 years ago by Hannnsen
  0

• Split crawling by sectors of the image

  #34 opened 3 years ago by szarma
  1

• Add possibility to hide/display ROIs with specified tags in examine.

  #35 opened 4 years ago by Hannnsen
  0

• inconsistent boundaries of rois with a "land bridge"

  #33 opened 4 years ago by szarma
  0

• Dashboard authentication runs out fast

  #32 opened 4 years ago by Hannnsen
  1

• ZIMIR ROIs

  #31 opened 4 years ago by spostic
  0

• path to pickle in dash or something similar

  #30 opened 4 years ago by spostic
  0

• Data storage in distributable file format.

  #26 opened 4 years ago by Hannnsen
  0

• islets.PicklePicker has missing reference values

  #24 opened 4 years ago by Hannnsen
  0

• concentration needs to be a string

  #22 opened 4 years ago by spostic
  0

• Core functionality could be put into a module

  #18 opened 4 years ago by Hannnsen
  0

• Add video in 'examine' that is zoomed to rois and time

  #2 opened 4 years ago by szarma
  1

• Negative Frequency in one of Ya-Chi's files

  #9 opened 4 years ago by szarma
  1

• There is something horribly wrong with filtering.

  #16 opened 4 years ago by szarma
  2

• Dash does not work until the whole experiment processing is done

  #20 opened 4 years ago by spostic
  0

• Merging or discarding in examine() should not reset view window.

  #14 opened 4 years ago by Hannnsen
  0

• Trace ordering in examine

  #1 opened 4 years ago by Hannnsen
  1

• Cross-filtering in examine based on absolute intensity, or Nevents etc

  #13 opened 4 years ago by szarma
  0

• Show several movies when available in the same series folder

  #12 opened 4 years ago by szarma
  0

• Enable edit manually Recording metadata from dash.

  #11 opened 4 years ago by szarma
  0

• Enable reading of more channels.

  #10 opened 4 years ago by szarma
  0

• Make jupyterdash apps have timeout, at least when the window is closed.

  #8 opened 4 years ago by szarma
  0

• make sum in Examine traces not remove other traces

  #7 opened 4 years ago by szarma
  0

• updating protocol or additional info in ExpLorer should autoreload it and present

  #6 opened 4 years ago by szarma
  0

• when updating table in ExpLorer, it should remove all filtering/sorting etc

  #5 opened 4 years ago by szarma
  0