szpiech

Pennsylvania State UniversityState College, PA

Pinned Repositories

ADZE
Allelic Diversity Analyzer
Language:C++0 2 02
asd
Calculate allele sharing distances
Language:C++4 4 12
biol610
intro to programming for IE2 evolution students
Language:Jupyter Notebook1 1 00
garlic
Genomic Autozygosity Regions Likelihood Inference and Classification
Language:C6 3 82
gmm
Gaussian Mixture Model estimation
Language:C++9 3 18
lassip
LASSI-Plus: A program to calculate haplotype frequency spectrum statistics
Language:C++8 2 82
param_parser
Command line argument parsing
Language:C++2 2 20
pfb2019
Programming for Biology 2019
Language:Python1 1 00
predictGMAP
A small program for interpolating genetic map distances
Language:C++5 2 02
selscan
Haplotype based scans for selection
Language:C116 12 12733

szpiech's Repositories

szpiech/selscan
Haplotype based scans for selection
Language:C116 12 12733
szpiech/gmm
Gaussian Mixture Model estimation
Language:C++9 3 18
szpiech/lassip
LASSI-Plus: A program to calculate haplotype frequency spectrum statistics
Language:C++8 2 82
szpiech/garlic
Genomic Autozygosity Regions Likelihood Inference and Classification
Language:C6 3 82
szpiech/predictGMAP
A small program for interpolating genetic map distances
Language:C++5 2 02
szpiech/asd
Calculate allele sharing distances
Language:C++4 4 12
szpiech/param_parser
Command line argument parsing
Language:C++2 2 20
szpiech/biol610
intro to programming for IE2 evolution students
Language:Jupyter Notebook1 1 00
szpiech/pfb2019
Programming for Biology 2019
Language:Python1 1 00
szpiech/ADZE
Allelic Diversity Analyzer
Language:C++0 2 02
szpiech/blue_af
Calculate BLUE allele frequencies
Language:Python1 0
szpiech/dog_recomb
Data associated with Auton et al., PLOS Genetics, 2013
szpiech/dog_recombination
Supporting data for doi:10.1534/g3.116.034678: A Pedigree-Based Map of Recombination in the Domestic Dog Genome
szpiech/errlog
Basic log file and error file logging
Language:C++2 0
szpiech/gala2-ROH
Computational pipeline for GALA II project analyzing runs of homozygosity
Language:R
szpiech/respect
A program for computing and plotting uni- and bi-variate MAF spectrums
Language:C++2 0
szpiech/ROHsims
Simulation code from Szpiech et al. (2019) AJHG In Press.
1 01
szpiech/Rxy-kin
Compute Rxy statistic for testing purging of alleles with related samples
Language:Python