Pinned Repositories
Achilles
Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database
Atlas
ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
WebAPI
OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
Achilles
Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM v4 database
AchillesWeb
Interactive web site for reviewing the results of the Achilles R package.
ansible-examples
A few starter examples of ansible playbooks, to show features and how they work together. See http://galaxy.ansible.com for example roles from the Ansible community for deploying many popular applications.
Atlas
Atlas is a unified interface developed to integrate features from across our specialized applications into a single user experience.
Broadsea
Broadsea deploys the full OHDSI technology stack (R methods library & web tools), using cross-platform Docker container technology.
charts
A collection of Helm charts
DataQualityDashboard
[in development] A tool to produce data quality reporting
t-abdul-basser's Repositories
t-abdul-basser/Achilles
Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM v4 database
t-abdul-basser/ansible-examples
A few starter examples of ansible playbooks, to show features and how they work together. See http://galaxy.ansible.com for example roles from the Ansible community for deploying many popular applications.
t-abdul-basser/Broadsea
Broadsea deploys the full OHDSI technology stack (R methods library & web tools), using cross-platform Docker container technology.
t-abdul-basser/charts
A collection of Helm charts
t-abdul-basser/DataQualityDashboard
[in development] A tool to produce data quality reporting
t-abdul-basser/atlas_dev_setup
t-abdul-basser/banana
Banana for Solr - A Port of Kibana
t-abdul-basser/Broadsea-MethodsLibrary
t-abdul-basser/Broadsea-WebTools
A Docker container that includes the OHDSI WebAPI (running in Apache Tomcat) and the OHDSI web applications.
t-abdul-basser/CommonDataModel
Definition and DDLs for the OMOP Common Data Model (CDM)
t-abdul-basser/ConceptPrevalence
t-abdul-basser/cors-anywhere
CORS Anywhere is a NodeJS reverse proxy which adds CORS headers to the proxied request.
t-abdul-basser/curation
t-abdul-basser/drug-condition-incidence
t-abdul-basser/gitbucket-docker
GitBucket Docker Image and Kubernetes Helm Chart
t-abdul-basser/go-ethereum
Official Go implementation of the Ethereum protocol
t-abdul-basser/IRkernel
R kernel for Jupyter
t-abdul-basser/jTDS
jTDS JDBC Driver
t-abdul-basser/kompose
Go from Docker Compose to Kubernetes
t-abdul-basser/leaf
Leaf Clinical Data Explorer
t-abdul-basser/node-ping
Node uptime monitor
t-abdul-basser/omop-notes-amazon-comprehend-medical
Gain medical insights from clinical notes stored in the OMOP Common Data Model using the Amazon Comprehend Medical NLP service
t-abdul-basser/ParallelLogger
An R package for easy parallel computing, logging, and function call automation.
t-abdul-basser/QueryLibrary
This is an R package that implements a library of standard queries that run against the OMOP-CDM.
t-abdul-basser/solr-import-export-json
This little project will help you to save/load your Solr collection in json format.
t-abdul-basser/SqlRender
This is an R package and Java library for rendering parameterized SQL, and translating it to different SQL dialects.
t-abdul-basser/starschema-bigquery-jdbc
Fork of Starschema's JDBC driver for BigQuery. https://code.google.com/p/starschema-bigquery-jdbc/
t-abdul-basser/stk-code
The code base of supertuxkart
t-abdul-basser/StudyProtocolSandbox
This repository is for developing study packages for OHDSI studies. Once completed, they can be moved to the StudyProtocols repository.
t-abdul-basser/WebAPI
[Under development] OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications