- OU-sde data (artificial)
python3 train.py -c config/ou-sde/[config path] -d [save dir]
- sc-RNA data (real)
python3 train.py -c config/rna/[config path] -d [save dir]
- uniform (artificial)
python3 train.py -c config/uniform/[config path] -d [save dir]
-
MDD
python3 eval_mdd.py -c config/eval_mdd.json -p [checkpoint path]
-
CDD
python3 eval_cdd.py -c config/eval_cdd.json -p [checkpoint path]
-
plot
python3 plot_ou-sde.py -c config/plot.json -p [checkpoint path]
-
MDD
python3 eval_mdd.py -c config/eval_mdd.json -p [checkpoint path]
-
CDD
python3 eval_lmt_traj.py -c config/eval_lmt_traj.json -p [ckpt] -pl [ckpt2]
-
plot on 2D-PCA space
python3 plot_rna.py -c config/plot.json -p [ckpt] -o [out_dir]