Pinned Repositories
usal_echo_public
Automate process for view classification of the Apical 4 chamber, Apical 2 chamber and Parasternal long axis. Segmentation of the Apical 4 chamber and Apical 2 chamber. Calculate measurements of the Ejection Fraction of the heart to classify it as normal, abnoral or grayzone.
63_immune_cells
Gene expression profiles of 63 immune cell types
ADRtarget
Machine learning guided association of adverse drug reactions with in vitro off-target pharmacology
awesome
😎 Awesome lists about all kinds of interesting topics
awesome-network-analysis
A curated list of awesome network analysis resources.
ClinicalTrials
ComplexHeatmap-reference
Documentation of ComplexHeatmap package
cruk-summer-school-2018
Summer school course materials collection
CytoCompare
CytoCompare: an R Package for Computational Comparisons of Cytometry Profiles.
DeepPATH
Classification of Lung cancer slide images using deep-learning
talele's Repositories
talele/tech-and-funding-toolkit
:money_with_wings: :chart_with_upwards_trend: :rocket: Tech and Funding Toolkit
talele/ComplexHeatmap-reference
Documentation of ComplexHeatmap package
talele/lincs-workshop-2020
CMap Notebooks for LINCS 2020 Workshop
talele/RNA-seq-analysis
RNAseq analysis notes from Ming Tang
talele/scRNA-seq_notes
A list of scRNA-seq analysis tools
talele/DeepPATH
Classification of Lung cancer slide images using deep-learning
talele/awesome
😎 Awesome lists about all kinds of interesting topics
talele/ADRtarget
Machine learning guided association of adverse drug reactions with in vitro off-target pharmacology
talele/CytoCompare
CytoCompare: an R Package for Computational Comparisons of Cytometry Profiles.
talele/usal_echo_public
Automate process for view classification of the Apical 4 chamber, Apical 2 chamber and Parasternal long axis. Segmentation of the Apical 4 chamber and Apical 2 chamber. Calculate measurements of the Ejection Fraction of the heart to classify it as normal, abnoral or grayzone.
talele/faers-toolkit
Tools for data analysis for the FDA Adverse Event Reporting System (FAERS) dataset
talele/immunedeconv
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter)
talele/awesome-network-analysis
A curated list of awesome network analysis resources.
talele/ICMA
Cardiac ultrasound and MRI image processing and analysis
talele/rclinicaltrials
An interface to the clinicaltrials.gov API
talele/immuneTopography
Analyze topography of tumor-infiltrating immune cells in histological images (QuPath/Matlab)
talele/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
talele/fiji_macros
talele/Rtoolbox
Toolbox with R scripts
talele/qupath
QuPath - Open Source Digital Pathology
talele/cruk-summer-school-2018
Summer school course materials collection
talele/TumGrowth
talele/TCGAsurvival
Scripts to analyze TCGA data
talele/pathway-mapper
An interactive and collaborative graphical curation tool for cancer pathways
talele/Immunophenogram
talele/KrumlovSingleCellTx2018
single cell transcriptome workshop in Krumlov, Jan 2018
talele/pfb2017
talele/63_immune_cells
Gene expression profiles of 63 immune cell types
talele/Intro-to-rnaseq-hpc-O2
This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster.
talele/R-Bioconductor-for-single-cell-RNAseq-data-analysis
R/Bioconductor for single cell RNAseq data analysis meetup workshop material