talkowski-lab/svtk

Issues

• svtk resolve StopIteration

  #102 opened 4 years ago by ghzhaole
  1

• standardization not giving proper output

  #96 opened 5 years ago by Sendeman
  6

• Notes on svtk usage on svaba output

  #101 opened 4 years ago by jykr
  0

• standardized vcf files from Manta and Lumpy can not be indexed with tabix -p vcf *.vcf.gz

  #100 opened 4 years ago by liud2
  7

• svtk bedcluster doesn't cluster events with identical coordinates

  #99 opened 4 years ago by mgonzalezporta
  0

• Creating a release/tag?

  #98 opened 5 years ago by holtgrewe
  2

• "no_effect" INFO tag

  #97 opened 5 years ago by kpjonsson
  0

• Annotate error

  #95 opened 5 years ago by kpjonsson
  1

• setup.py imports

  #94 opened 5 years ago by jjfarrell
  0

• No module named 'svtk.baf' error

  #93 opened 5 years ago by jjfarrell
  0

• vcfcluster for pacbio SV calls?

  #89 opened 6 years ago by ggstatgen
  0

• Clustering on second chr for translocation doesn't seem to be occurring for svtk resolve

  #86 opened 6 years ago by hab45
  0

• svtk resolve breaks if unresolved file not specified

  #85 opened 6 years ago by hab45
  0

• Typo in svtk help text

  #55 opened 7 years ago by RCollins13
  0

• svtk standardize do not work with SVs with POS=0

  #45 opened 7 years ago by xuefzhao
  0

• error in RF

  #50 opened 7 years ago by xuefzhao
  1

• pesr-test

  #51 opened 7 years ago by xuefzhao
  0

• error in the labelers.py

  #53 opened 7 years ago by xuefzhao
  0

• Report samples with zero variants in svtk count-svtypes

  #49 opened 7 years ago by RCollins13
  0

• POS =0

  #48 opened 7 years ago by xuefzhao
  0

• vcfcluster reporting LEN=0 for all variants

  #37 opened 7 years ago by RCollins13
  0

• Resolve column ordering between vcf2bed and RdTest

  #36 opened 7 years ago by RCollins13
  0

• vcfcluster & handling multiple chromosomes

  #35 opened 7 years ago by RCollins13
  0

• Internal VCF sort in vcfcluster

  #34 opened 7 years ago by RCollins13
  0

• Internal VCF sort during stvk standardize

  #33 opened 7 years ago by RCollins13
  0

• add sample ID to the output from svtk collect-pesr

  #26 opened 7 years ago by xuefzhao
  1