Nodes missing from .confmap
HatmanStack opened this issue · 0 comments
HatmanStack commented
Bug description
Nodes are not propagating from the anchor node as expected. They're greyed out and not present on the multi instance confmap.
Expected behaviour
All nodes with a single parent to be included in the confmap, predicted, and validated in the training loop.
Actual behaviour
Some nodes are included some are not. All are in a tree config.
Your personal set up
- OS:
Windows 10 pro 22h2
- Version(s):
SLEAP v1.3.3, python 3.7.12
- SLEAP installation method (listed here):
Environment packages
(sleap) C:\Users\Crosby>conda list
# packages in environment at C:\Users\Crosby\miniconda3\envs\sleap:
#
# Name Version Build Channel
absl-py 1.0.0 pypi_0 pypi
astunparse 1.6.3 pypi_0 pypi
attrs 21.4.0 pyhd8ed1ab_0 conda-forge
backports-zoneinfo 0.2.1 pypi_0 pypi
blosc 1.21.5 hdccc3a2_0 conda-forge
brotli 1.0.9 hcfcfb64_9 conda-forge
brotli-bin 1.0.9 hcfcfb64_9 conda-forge
bzip2 1.0.8 hcfcfb64_5 conda-forge
c-blosc2 2.13.2 h183a6f4_0 conda-forge
ca-certificates 2024.2.2 h56e8100_0 conda-forge
cached-property 1.5.2 pypi_0 pypi
cachetools 4.2.4 pypi_0 pypi
cattrs 1.1.1 pyhd8ed1ab_0 conda-forge
certifi 2024.2.2 pyhd8ed1ab_0 conda-forge
cfitsio 4.0.0 hd67004f_0 conda-forge
charls 2.3.4 h39d44d4_0 conda-forge
charset-normalizer 2.0.9 pypi_0 pypi
cloudpickle 2.2.1 pyhd8ed1ab_0 conda-forge
cuda-nvcc 11.3.58 hb8d16a4_0 nvidia
cudatoolkit 11.3.1 hf2f0253_13 conda-forge
cudnn 8.2.1.32 h754d62a_0 conda-forge
cycler 0.11.0 pyhd8ed1ab_0 conda-forge
cytoolz 0.12.0 py37hcc03f2d_0 conda-forge
dask-core 2022.2.0 pyhd8ed1ab_0 conda-forge
efficientnet 1.0.0 pypi_0 pypi
flatbuffers 2.0 pypi_0 pypi
fonttools 4.38.0 py37h51bd9d9_0 conda-forge
freeglut 3.2.2 h63175ca_2 conda-forge
freetype 2.12.1 hdaf720e_2 conda-forge
fsspec 2023.1.0 pyhd8ed1ab_0 conda-forge
gast 0.4.0 pypi_0 pypi
geos 3.11.0 h39d44d4_0 conda-forge
giflib 5.2.1 h64bf75a_3 conda-forge
google-auth 2.3.3 pypi_0 pypi
google-auth-oauthlib 0.4.6 pypi_0 pypi
google-pasta 0.2.0 pypi_0 pypi
grpcio 1.43.0 pypi_0 pypi
h5py 3.1.0 pypi_0 pypi
hdmf 3.6.1 pypi_0 pypi
icu 69.1 h0e60522_0 conda-forge
idna 3.3 pypi_0 pypi
image-classifiers 1.0.0 pypi_0 pypi
imagecodecs 2021.11.20 py37hfea8715_2 conda-forge
imageio 2.33.1 pyh8c1a49c_0 conda-forge
imgaug 0.4.0 pyhd8ed1ab_1 conda-forge
imgstore 0.2.9 pypi_0 pypi
importlib-metadata 4.2.0 pypi_0 pypi
importlib-resources 5.12.0 pypi_0 pypi
intel-openmp 2024.0.0 h57928b3_49841 conda-forge
jasper 2.0.33 hc2e4405_1 conda-forge
joblib 1.3.2 pyhd8ed1ab_0 conda-forge
jpeg 9e hcfcfb64_3 conda-forge
jsmin 3.0.1 pyhd8ed1ab_0 conda-forge
jsonpickle 1.2 py_0 conda-forge
jsonschema 4.17.3 pypi_0 pypi
jxrlib 1.1 hcfcfb64_3 conda-forge
keras 2.7.0 pypi_0 pypi
keras-applications 1.0.8 pypi_0 pypi
keras-preprocessing 1.1.2 pypi_0 pypi
kiwisolver 1.4.4 py37h8c56517_0 conda-forge
krb5 1.20.1 h6609f42_0 conda-forge
lcms2 2.14 h90d422f_0 conda-forge
lerc 3.0 h0e60522_0 conda-forge
libaec 1.1.2 h63175ca_1 conda-forge
libblas 3.9.0 21_win64_mkl conda-forge
libbrotlicommon 1.0.9 hcfcfb64_9 conda-forge
libbrotlidec 1.0.9 hcfcfb64_9 conda-forge
libbrotlienc 1.0.9 hcfcfb64_9 conda-forge
libcblas 3.9.0 21_win64_mkl conda-forge
libclang 12.0.0 pypi_0 pypi
libcurl 8.1.2 h68f0423_0 conda-forge
libdeflate 1.10 h8ffe710_0 conda-forge
libhwloc 2.9.3 default_haede6df_1009 conda-forge
libiconv 1.17 hcfcfb64_2 conda-forge
liblapack 3.9.0 21_win64_mkl conda-forge
liblapacke 3.9.0 21_win64_mkl conda-forge
libopencv 4.5.1 py37ha0199f4_0 conda-forge
libpng 1.6.42 h19919ed_0 conda-forge
libprotobuf 3.21.8 h12be248_0 conda-forge
libsodium 1.0.18 h8d14728_1 conda-forge
libsqlite 3.45.1 hcfcfb64_0 conda-forge
libssh2 1.10.0 h680486a_3 conda-forge
libtiff 4.4.0 hc4061b1_0 conda-forge
libwebp-base 1.3.2 hcfcfb64_0 conda-forge
libxcb 1.13 hcd874cb_1004 conda-forge
libxml2 2.12.5 hc3477c8_0 conda-forge
libxslt 1.1.39 h3df6e99_0 conda-forge
libzlib 1.2.13 hcfcfb64_5 conda-forge
libzopfli 1.0.3 h0e60522_0 conda-forge
locket 1.0.0 pyhd8ed1ab_0 conda-forge
lz4-c 1.9.3 h8ffe710_1 conda-forge
m2w64-gcc-libgfortran 5.3.0 6 conda-forge
m2w64-gcc-libs 5.3.0 7 conda-forge
m2w64-gcc-libs-core 5.3.0 7 conda-forge
m2w64-gmp 6.1.0 2 conda-forge
m2w64-libwinpthread-git 5.0.0.4634.697f757 2 conda-forge
markdown 3.3.6 pypi_0 pypi
markdown-it-py 2.2.0 pyhd8ed1ab_0 conda-forge
matplotlib-base 3.5.3 py37hbaab90a_2 conda-forge
mdurl 0.1.2 pyhd8ed1ab_0 conda-forge
mkl 2024.0.0 h66d3029_49657 conda-forge
msys2-conda-epoch 20160418 1 conda-forge
munkres 1.1.4 pyh9f0ad1d_0 conda-forge
ndx-pose 0.1.1 pypi_0 pypi
networkx 2.6.3 pyhd8ed1ab_1 conda-forge
nixio 1.5.3 pypi_0 pypi
numpy 1.19.5 pypi_0 pypi
oauthlib 3.1.1 pypi_0 pypi
opencv 4.5.1 py37h03978a9_0 conda-forge
opencv-python-headless 4.2.0.34 pypi_0 pypi
openjpeg 2.5.0 hc9384bd_1 conda-forge
openssl 1.1.1w hcfcfb64_0 conda-forge
opt-einsum 3.3.0 pypi_0 pypi
packaging 21.3 pypi_0 pypi
pandas 1.3.5 py37h9386db6_0 conda-forge
partd 1.4.1 pyhd8ed1ab_0 conda-forge
patsy 0.5.6 pyhd8ed1ab_0 conda-forge
pillow 9.2.0 py37h42a8222_2 conda-forge
pip 24.0 pyhd8ed1ab_0 conda-forge
pkgutil-resolve-name 1.3.10 pypi_0 pypi
protobuf 3.19.1 pypi_0 pypi
psutil 5.9.3 py37h51bd9d9_0 conda-forge
pthread-stubs 0.4 hcd874cb_1001 conda-forge
pthreads-win32 2.9.1 hfa6e2cd_3 conda-forge
py-opencv 4.5.1 py37heaed05f_0 conda-forge
pyasn1 0.4.8 pypi_0 pypi
pyasn1-modules 0.2.8 pypi_0 pypi
pygments 2.17.2 pyhd8ed1ab_0 conda-forge
pykalman 0.9.5 py_1 conda-forge
pynwb 2.3.3 pypi_0 pypi
pyparsing 3.0.6 pypi_0 pypi
pyrsistent 0.19.3 pypi_0 pypi
pyside2 5.13.2 py37h760f651_8 conda-forge
python 3.7.12 h7840368_100_cpython conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python-rapidjson 1.9 py37h7f67f24_0 conda-forge
python_abi 3.7 4_cp37m conda-forge
pytz 2024.1 pyhd8ed1ab_0 conda-forge
pywavelets 1.3.0 py37h3a130e4_1 conda-forge
pyyaml 6.0 py37hcc03f2d_4 conda-forge
pyzmq 24.0.1 py37h7347f05_0 conda-forge
qimage2ndarray 1.10.0 pypi_0 pypi
qt 5.12.9 h556501e_6 conda-forge
qtpy 2.4.1 pyhd8ed1ab_0 conda-forge
requests 2.26.0 pypi_0 pypi
requests-oauthlib 1.3.0 pypi_0 pypi
rich 13.7.0 pyhd8ed1ab_0 conda-forge
ruamel-yaml 0.17.32 pypi_0 pypi
ruamel-yaml-clib 0.2.7 pypi_0 pypi
scikit-image 0.19.3 py37h3182a2c_1 conda-forge
scikit-learn 1.0 py37ha78be43_1 conda-forge
scikit-video 1.1.11 pyh24bf2e0_0 conda-forge
scipy 1.7.3 py37hb6553fb_0 conda-forge
seaborn 0.12.2 hd8ed1ab_0 conda-forge
seaborn-base 0.12.2 pyhd8ed1ab_0 conda-forge
segmentation-models 1.0.1 pypi_0 pypi
setuptools 59.8.0 py37h03978a9_1 conda-forge
setuptools-scm 6.3.2 pypi_0 pypi
shapely 1.8.5 py37h475e9a0_0 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
sleap 1.3.3 pypi_0 pypi
snappy 1.1.10 hfb803bf_0 conda-forge
sqlite 3.45.1 hcfcfb64_0 conda-forge
statsmodels 0.13.2 py37h3a130e4_0 conda-forge
tbb 2021.11.0 h91493d7_1 conda-forge
tensorboard 2.7.0 pypi_0 pypi
tensorboard-data-server 0.6.1 pypi_0 pypi
tensorboard-plugin-wit 1.8.0 pypi_0 pypi
tensorflow 2.7.0 pypi_0 pypi
tensorflow-estimator 2.7.0 pypi_0 pypi
tensorflow-hub 0.12.0 pyhca92ed8_0 conda-forge
tensorflow-io-gcs-filesystem 0.23.1 pypi_0 pypi
termcolor 1.1.0 pypi_0 pypi
threadpoolctl 3.1.0 pyh8a188c0_0 conda-forge
tifffile 2021.11.2 pyhd8ed1ab_0 conda-forge
tk 8.6.13 h5226925_1 conda-forge
tomli 2.0.0 pypi_0 pypi
toolz 0.12.1 pyhd8ed1ab_0 conda-forge
typing-extensions 4.0.1 pypi_0 pypi
typing_extensions 4.7.1 pyha770c72_0 conda-forge
tzdata 2023.3 pypi_0 pypi
tzlocal 5.0.1 pypi_0 pypi
ucrt 10.0.22621.0 h57928b3_0 conda-forge
unicodedata2 14.0.0 py37hcc03f2d_1 conda-forge
urllib3 1.26.7 pypi_0 pypi
vc 14.3 hcf57466_18 conda-forge
vc14_runtime 14.38.33130 h82b7239_18 conda-forge
vs2015_runtime 14.38.33130 hcb4865c_18 conda-forge
werkzeug 2.0.2 pypi_0 pypi
wheel 0.42.0 pyhd8ed1ab_0 conda-forge
wrapt 1.13.3 pypi_0 pypi
xorg-libxau 1.0.11 hcd874cb_0 conda-forge
xorg-libxdmcp 1.1.3 hcd874cb_0 conda-forge
xz 5.2.6 h8d14728_0 conda-forge
yaml 0.2.5 h8ffe710_2 conda-forge
zeromq 4.3.4 h0e60522_1 conda-forge
zfp 0.5.5 h0e60522_8 conda-forge
zipp 3.15.0 pypi_0 pypi
zlib 1.2.13 hcfcfb64_5 conda-forge
zlib-ng 2.0.7 hcfcfb64_0 conda-forge
zstd 1.5.5 h12be248_0 conda-forge
Logs
# paste relevant logs here, if any
