Pinned Repositories
Aclust
A-Clustering functions and analysis pipeline for methylation outcome data
HE_Genetic_Correlation
Code and documentation for computing genetic correlation using a Haseman-Elston type formula
MetaCor
An R package for stratified genetic association study, when individuals are correlated between the strata
Ancestry_specific_freqs
Code for computing ancestry-specific allele frequencies in admixed populations
association_analyses_class
Presentations and data set from a class about association analyses in admixed populations
Binary_combine
Association tests of rare variants with binary outcome when combining heterogeneous studies.
BinomiRare
R package implementing the BinomiRare test for rare-variant-disease association, for pooled and meta-analyses.
generalize
An R package to test (and display results) for generalization (and replication) of SNP-trait associations from one GWAS to another
Heritability_CIs
Computing confidence intervals for heritability (and other variance components)
SDB_gene_expression_associations
Results from Sofer and Li et al., EBioMedicine, 2020
tamartsi's Repositories
tamartsi/Gendered_indices_and_insomnia
tamartsi/Insomnia_metablites
tamartsi/Remove_overlap_GWAS_summary_stat
Remove the contribution of a set of individuals from a summary stat file. https://doi.org/10.5281/zenodo.7041630
tamartsi/Figures_repository
Repository for figure code
tamartsi/BP-PRS-Ensemble
tamartsi/Heritability_CIs
Computing confidence intervals for heritability (and other variance components)
tamartsi/PRS-from-paper-PMID-36174398
tamartsi/OSA_misclassification
Simulation study demonstrating the effect of OSA misclassification on power and bias
tamartsi/Genetic_testing_awareness_SOL
tamartsi/Ancestry_specific_freqs
Code for computing ancestry-specific allele frequencies in admixed populations
tamartsi/HE_Genetic_Correlation
Code and documentation for computing genetic correlation using a Haseman-Elston type formula
tamartsi/PRSs_for_admixed_populations
tamartsi/SDB_gene_expression_associations
Results from Sofer and Li et al., EBioMedicine, 2020
tamartsi/GENESIS-1
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness
tamartsi/Binary_combine
Association tests of rare variants with binary outcome when combining heterogeneous studies.
tamartsi/Variant_specific_inflation
Computing and studying variant-specific inflation expected due to stratified variance
tamartsi/RECSO
Robust and Efficient Analysis using Control function approach, of a Secondary Outcome
tamartsi/sleepiness_methylation
tamartsi/Aclust
A-Clustering functions and analysis pipeline for methylation outcome data
tamartsi/MetaCor
An R package for stratified genetic association study, when individuals are correlated between the strata
tamartsi/association_analyses_class
Presentations and data set from a class about association analyses in admixed populations
tamartsi/GENESIS
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/GENESIS.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=GENESIS.
tamartsi/generalize
An R package to test (and display results) for generalization (and replication) of SNP-trait associations from one GWAS to another
tamartsi/BinomiRare
R package implementing the BinomiRare test for rare-variant-disease association, for pooled and meta-analyses.
tamartsi/Multiple_correlated_secondary_outcomes_SNP_set_test
Code for the test, and for generating simulated data, of the association of a SNP-set with multiple correlated secondary outcome in case-control sutyd.
tamartsi/NOC_adjustment_to_estimate_ETT
A negative outcome control approach to estimate ETT at the presence of unobserved confounding
tamartsi/Additive_G-E_interaction
Test for additive gene-environement interaction