Real-time calucium imaging software based on CaImAn.
- frame-by-frame OnACID with simple GUI
- works on Windows, Mac or Linux
- false-positive neuron detector based on CNMF-E Reviewer
- Issue: automl model cannot use in Windows
- real-time detection of synchronous firing of neurons
- laser handling module to interfere with mouse neurons
system overview: https://docs.google.com/presentation/d/1JQzA2FbH6-Qm684_ZjaZ5lzTnqpJ5fwVmMV1iSqYTr8
please set Python to version 3.7 before runnning below
python -V # >> 3.7.0
# Mac / Linux
source setup.sh
# Windows
setup.ps1
# from miniscope
python main.py -s
# from video file
python main.py -f