tand826/wsi_to_patches

Make patches from whole slide image.

Prerequisites

• 3.6 =< [your python version]
• Install OpenSlide (see. https://openslide.org/download/)

Setup

pip install -r requirements.txt

How to use

patcher.py [-h] [-s OUTPUT_SIZE] [-ov OVERLAP] [-ou OUTPUT_DIR] [-t THRESH] img_path

• note :: "thresh" means the threshold value for deciding whether the patch is a part of a stump. Trying a few times with some values recommended.