Pinned Repositories
any2fasta
Convert various sequence formats to FASTA
apcluster
apcluster_effector_leafdrop_510_filtered_lessthan5tpm
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
bigSCale2
Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
bioinformatics-workshop
RNA-seq Tutorial
buscadoR
Annotating LRR-RP and LRR-RK proteins
CAMERA
This is the git repository matching the Bioconductor package CAMERA: Collection of annotation related methods for mass spectrometry data
Single_Cell_Plants
tangbozeng's Repositories
tangbozeng/Single_Cell_Plants
tangbozeng/tangbozeng.github.io
tangbozeng/buscadoR
Annotating LRR-RP and LRR-RK proteins
tangbozeng/cheatsheets
RStudio Cheat Sheets
tangbozeng/COPILOT
Single cell RNA-seq preprocessing tool for gene-by-cell matrices of UMI counts. It is recommended to use the raw spliced and unpliced counts matrices produced by scKB pipeline as the input of copilot.
tangbozeng/data-visualisation-course
interactive data visualisation
tangbozeng/drmn
DRMN with multi-task learning regression
tangbozeng/gggenomes
A grammar of graphics for comparative genomics
tangbozeng/Interactive-3D-Plotting-in-Seurat-3.0.0
This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
tangbozeng/Intro-to-ChIPseq
Intro to ChIPseq using HPC
tangbozeng/MACS
MACS -- Model-based Analysis of ChIP-Seq
tangbozeng/MEGENA
Multiscale embedded gene co-expression network analysis
tangbozeng/mogo
R package for easy GO analysis of M.oryzae gene lists.
tangbozeng/nlrsnake
snakemake pipeline for running NLRtracker.R on TSL HPC
tangbozeng/OrthoFinder
Phylogenetic orthology inference for comparative genomics
tangbozeng/pagoda2
R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
tangbozeng/pepdiff
tools for working with peptide quantification Mass Spec data
tangbozeng/PHYTOMap
tangbozeng/pRNASeqTools
plant NGS analysis
tangbozeng/R-ebook
R programming ebooks
tangbozeng/rnaseq
public RNA-Seq datasets
tangbozeng/SCENIC
SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
tangbozeng/scRNAseq-analysis-notes
scRNAseq analysis notes from Ming Tang
tangbozeng/SIGNET
tangbozeng/slingshot
Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
tangbozeng/smartPARE
tangbozeng/statements
Successful Job Applications and Grants
tangbozeng/TransDecoder
TransDecoder source
tangbozeng/trend-db
Home to the development of the TREND-DB application
tangbozeng/veloviz
RNA-velocity informed embeddings for visualizing cellular trajectories