tanghaibao
Genomics data monkey, hacking on human genetics and diverse agricultural crops
San Francisco Bay Area
Pinned Repositories
allhic
Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
bio-pipeline
My collection of light bioinformatics analysis pipelines for specific tasks
goatools
Python library to handle Gene Ontology (GO) terms
jcvi
Python library to facilitate genome assembly, annotation, and comparative genomics
klassify
Classify chimeric reads based on unique kmer contents
mcscan
Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format
quota-alignment
Guided synteny alignment between duplicated genomes (within specified quota constraint)
rust-wfa2
Rust binding for WFA2-lib
treecut
Find nodes in hierarchical clustering that are statistically significant
trimReads
Utility programs to trim or sort Illumina reads with adapter sequences
tanghaibao's Repositories
tanghaibao/goatools
Python library to handle Gene Ontology (GO) terms
tanghaibao/jcvi
Python library to facilitate genome assembly, annotation, and comparative genomics
tanghaibao/bio-pipeline
My collection of light bioinformatics analysis pipelines for specific tasks
tanghaibao/allhic
Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
tanghaibao/quota-alignment
Guided synteny alignment between duplicated genomes (within specified quota constraint)
tanghaibao/treecut
Find nodes in hierarchical clustering that are statistically significant
tanghaibao/mcscan
Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format
tanghaibao/trimReads
Utility programs to trim or sort Illumina reads with adapter sequences
tanghaibao/rust-wfa2
Rust binding for WFA2-lib
tanghaibao/klassify
Classify chimeric reads based on unique kmer contents
tanghaibao/pybind11_log
A bridge from C++ to Python logging
tanghaibao/dna-pygments
Javascript code to highlight features in biological sequences
tanghaibao/jcvi-bin
Collection of third-party softwares used in jcvi library
tanghaibao/positional-history
Internal scripts to run the pipeline to determine the transpositions of A. thaliana genes with respect to multiple outgroups
tanghaibao/Splithunter
Identify split reads in given chromosomal regions
tanghaibao/dotfiles
bashrc, vimrc, gitconfig and various other configuration files
tanghaibao/pgdd
Dynamic contents within the plant genome duplication database
tanghaibao/nannou-playground
Animation projects that leverage the excellent nannou library
tanghaibao/tanghaibao