tanglingfung

bcbio-nextgen

Best-practice pipelines for fully automated high throughput sequencing analysis

cgat

CGAT - Computational Genomics Analysis Tools

cloudbiolinux

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

ensembl-rest-client

Java client for the Ensembl REST API.

gemini

a lightweight db framework for disease and population genetics.

metaseq

Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data

methylseq

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

projects

stitch

Join overlapping paired-end Illumina reads

tanglingfung/bcbio-nextgen

Best-practice pipelines for fully automated high throughput sequencing analysis

tanglingfung/cgat

CGAT - Computational Genomics Analysis Tools

tanglingfung/cloudbiolinux

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

tanglingfung/ensembl-rest-client

Java client for the Ensembl REST API.

tanglingfung/gemini

a lightweight db framework for disease and population genetics.

tanglingfung/metaseq

Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data

tanglingfung/methylseq

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

tanglingfung/projects

tanglingfung/stitch

Join overlapping paired-end Illumina reads

tanglingfung/Trawler

Trawler is a integrated pipeline for the analysis of large scale chromatin-immunoprecipitation (ChIP) data and other large scale DNA-RNA datasets.

tanglingfung/wg-blimp

wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data