Pinned Repositories
metabarcoding_QAQC_pipeline
Pipeline scripts for initial quality control, ASV assignment, taxonomic classification, and preliminary data visualization
adegenet
adegenet: a R package for the multivariate analysis of genetic markers
admixture_pie_chart_map_tutorial
Tutorial for visualising admixture on a map
Bayescan
Using Bayescan program and visualizing results
Bayesian_Workshop
Material for a Bayesian statistics workshop
BioinfinvRepro
Curso de introducción a la bioinformática e investigación reproducible
eDNAoccurrenceSDM
Indonesia_eDNA
Environmental DNA in a Global Biodiversity Hotspot: Lessons from Coral Reef Fish Diversity Across the Indonesian Archipelago
introgression
Supplementary files and scripts used in the paper "Spatial gradients of introgressed ancestry reveal cryptic connectivity patterns in a high gene flow marine fish"
MolEcolRes_Valdivia_etal_2021
taniavaldiviac's Repositories
taniavaldiviac/adegenet
adegenet: a R package for the multivariate analysis of genetic markers
taniavaldiviac/admixture_pie_chart_map_tutorial
Tutorial for visualising admixture on a map
taniavaldiviac/Bayescan
Using Bayescan program and visualizing results
taniavaldiviac/Bayesian_Workshop
Material for a Bayesian statistics workshop
taniavaldiviac/BioinfinvRepro
Curso de introducción a la bioinformática e investigación reproducible
taniavaldiviac/eDNAoccurrenceSDM
taniavaldiviac/Indonesia_eDNA
Environmental DNA in a Global Biodiversity Hotspot: Lessons from Coral Reef Fish Diversity Across the Indonesian Archipelago
taniavaldiviac/introgression
Supplementary files and scripts used in the paper "Spatial gradients of introgressed ancestry reveal cryptic connectivity patterns in a high gene flow marine fish"
taniavaldiviac/MARINeDNA_referenceDB_NCBI
taniavaldiviac/MEDeDNA--reserves
Data and code to conduct analyses and produce figures in Boulanger et al. (2021) Environmental DNA metabarcoding reveals and unpacks a biodiversity conservation paradox in Mediterranean marine reserves.
taniavaldiviac/mixed-effect-gams
Repo for tutorial/paper on mixed-effect GAMs
taniavaldiviac/MolEcolRes_Valdivia_etal_2021
taniavaldiviac/Network_connectivity_GOCseascape
taniavaldiviac/NumericalEcology
code for Numerical Ecology with R
taniavaldiviac/qPCR_LOD_Calc
LoD calculator
taniavaldiviac/RedesPDCB_20212
Material para el curso "Estructura y Dinámica de Redes Complejas" del Programa de Doctorado en Ciencias Biomédicas, semestre 2021-2
taniavaldiviac/scripts
Scripts for analysis used during the course
taniavaldiviac/sdmTMB
:earth_americas: An R package for spatial and spatiotemporal GLMMs with TMB
taniavaldiviac/simple-website-template
Website URL
taniavaldiviac/stacks_workflow
RADseq workflow built around STACKS
taniavaldiviac/utility_scripts
Scripts for population genetics analysis
taniavaldiviac/WorkshopAdvancedBioinformatics2021
Material for the Workshop in Advanced Bioinformatics