tanyalama
-omics forever <3 | Asst Professor of Genomics, Smith College
Assistant Professor of Genomics, Smith CollegeNorthampton, MA
Pinned Repositories
Conservation-Genomics-course-DTU
Lecture and exercises for the module "Conservation Genomics" at DTU PhD course
contemporary_analysis
hPSMC
Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes
ncbi_sequence_read_archive_submit
Basic instructions for submitting raw read data and associated metadata to NCBI sequence read archive.
NGS_pipeline
This repo contains scripts I use for processing reads and calling variants for next generation sequencing data set, specifically whole genome sequencing dataset.
OtterGenomeProject
Scripts associated with the sea otter and giant otter genome project (Beichman et al. 2019)
project_bat_longevity
project_canada_lynx_wgs
project_grants
A public repo for my successful AND unsuccessful grant proposals
project_red_squirrel_rad
tanyalama's Repositories
tanyalama/project_grants
A public repo for my successful AND unsuccessful grant proposals
tanyalama/Conservation-Genomics-course-DTU
Lecture and exercises for the module "Conservation Genomics" at DTU PhD course
tanyalama/contemporary_analysis
tanyalama/hPSMC
Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes
tanyalama/ncbi_sequence_read_archive_submit
Basic instructions for submitting raw read data and associated metadata to NCBI sequence read archive.
tanyalama/NGS_pipeline
This repo contains scripts I use for processing reads and calling variants for next generation sequencing data set, specifically whole genome sequencing dataset.
tanyalama/OtterGenomeProject
Scripts associated with the sea otter and giant otter genome project (Beichman et al. 2019)
tanyalama/project_canada_lynx_wgs
tanyalama/2nd.paper
pipeline for second paper
tanyalama/project_bat_longevity
tanyalama/project_red_squirrel_rad
tanyalama/DGS_LG_Labs
tanyalama/informatics-tools
Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files
tanyalama/LandscapeGenomics
Tutorials for bioinformatics and data analysis related to landscape genomics
tanyalama/LittleBrownBats_WNSSurvivorsVsNonsurvivors
Code and input files for Auteri and Knowles 2019 publication
tanyalama/Manuscripts
tanyalama/project_iberian_lynx_fluidigm
tanyalama/project_nsf_reu
tanyalama/RAD_Tools
A collection of usefull tools for RAD or GBS data analysis
tanyalama/selection_screen_tools
tanyalama/SMSC_Conservation_Genomics
Course materials for SMSC course on Conservation Genomics
tanyalama/tanyalama.github.io
This is the repository I use to manage my simple academic website at https://tanyalama.github.io/
tanyalama/TOGA
TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.
tanyalama/Variant-Calling