Pinned Repositories
BD-setups
changes-in-insulin-granules-
short description of repository
hugo-future-imperfect-slim
Multilingual Blogging Theme for Hugo | Check the Wiki for Documentation
INDEL_signature
about insertion and deletion in cancer exon genome
maftools
Summarize, Analyze and Visualize MAF files from TCGA or in house studies.
PAWSASP
pancancer mutational signature association study program
prad_signature
Prostate Cancer Alteration Signature Analysis
pumpkin-book
《机器学习》（西瓜书）公式推导解析，在线阅读地址：https://datawhalechina.github.io/pumpkin-book
R-work
Collect and organize all my own R scripts in study process
sigminer
🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R
taoziyu97's Repositories
taoziyu97/INDEL_signature
about insertion and deletion in cancer exon genome
taoziyu97/PAWSASP
pancancer mutational signature association study program
taoziyu97/BD-setups
taoziyu97/changes-in-insulin-granules-
short description of repository
taoziyu97/hugo-future-imperfect-slim
Multilingual Blogging Theme for Hugo | Check the Wiki for Documentation
taoziyu97/maftools
Summarize, Analyze and Visualize MAF files from TCGA or in house studies.
taoziyu97/prad_signature
Prostate Cancer Alteration Signature Analysis
taoziyu97/pumpkin-book
《机器学习》（西瓜书）公式推导解析，在线阅读地址：https://datawhalechina.github.io/pumpkin-book
taoziyu97/R-work
Collect and organize all my own R scripts in study process
taoziyu97/sigminer
🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R
taoziyu97/sigminer.helper
Helper package for Sigminer
taoziyu97/SignatureAnalyzer-GPU
GPU implementation of ARD NMF
taoziyu97/SigProfilerExtractor
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
taoziyu97/SigProfilerMatrixGenerator
SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.
taoziyu97/sra-tools
SRA Tools
taoziyu97/taoziyu97.github.io
taoziyu97/TCGAmutations
R data package for pre-compiled somatic mutations from TCGA cohorts (from Broad Firehose and TCGA MC3 Project)
taoziyu97/TIDEpy
TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade in Python.
taoziyu97/tidytuesday
Official repo for the #tidytuesday project
taoziyu97/Workshop
课题组每周研讨会