Pinned Repositories
aml-training
The most recent version of the Applied Machine Learning notes
ashr
An R package for adaptive shrinkage
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
cdr3-QTL
Trans-association between HLA and TCR-CDR3
Cell-type-ieQTL-pipeline
A collection of scripts to estimate cell type estimates from bulk tissue gene expression data, perform ieQTL mapping and run colocalization analysis
cheatsheets
RStudio Cheat Sheets
corrr
R package for exploring correlations
CROP-seq
Repository for the processing and analysis of CROP-seq data
tashkeev-alex's Repositories
tashkeev-alex/ashr
An R package for adaptive shrinkage
tashkeev-alex/cdr3-QTL
Trans-association between HLA and TCR-CDR3
tashkeev-alex/cheatsheets
RStudio Cheat Sheets
tashkeev-alex/corrr
R package for exploring correlations
tashkeev-alex/CROP-seq
Repository for the processing and analysis of CROP-seq data
tashkeev-alex/csvtk
A cross-platform, efficient and practical CSV/TSV toolkit in Golang
tashkeev-alex/DACOR
tashkeev-alex/dplyr-cli
Manipulate CSV files on the command line using dplyr
tashkeev-alex/effective-computing
Effective Computing—Resources for Computational Biologists
tashkeev-alex/fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
tashkeev-alex/fiveMinuteStats
A repo of short "vignettes" illustrating statistical concepts
tashkeev-alex/gtexresults
Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic studies with multiple conditions."
tashkeev-alex/hail
Scalable genomic data analysis.
tashkeev-alex/locuscomparer
LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
tashkeev-alex/mashr
An R package for multivariate adaptive shrinkage.
tashkeev-alex/mixedmodels-misc
miscellaneous materials for mixed models, mostly in R
tashkeev-alex/mixqtl
Total and allele specific read based cis-QTL, fine-mapping, and prediction
tashkeev-alex/MTAT.03.239_Bioinformatics
Teaching materials and tutorials for the bioinformatics course thought at the University of Tartu
tashkeev-alex/nebula
tashkeev-alex/openPrimeR
An R Package for Multiplex PCR Primer Design and Analysis
tashkeev-alex/Qtlizer
tashkeev-alex/qtltools
A complete tool set for molecular QTL discovery and analysis
tashkeev-alex/regtools
Various tools for linear, nonlinear and nonparametric regression.
tashkeev-alex/repaq
A fast lossless FASTQ compressor with ultra-high compression ratio
tashkeev-alex/seqkit
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
tashkeev-alex/susieR
R package for "sum of single effects" regression.
tashkeev-alex/systemsgenetics
Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
tashkeev-alex/tcr-annotation-methodology
📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery
tashkeev-alex/tensorqtl
Ultrafast GPU-based QTL mapper
tashkeev-alex/vaccination_study