tatami-inc/tatami_hdf5

Salvage the secondary extraction for the compressed sparse reader somehow

LTLA opened this issue · 1 comments

LTLA commented

To stop it from being completely catastrophic as it is now. Suggest just doing something like in that Gist that I have floating around; just create a new CompressedSparseMatrix and fetch rows from it. Every request for something outside the cached range will trigger a full index read, but that's still better than the current state of affairs.

LTLA commented

Should be possible now with oracles to pick, e.g., the next 1000 entries and cache them.