tatonetti-lab/onsides

Issues

• missing rxcui ids in rxcui_setid_map table

  #68 opened 17 days ago by inessmit
  0

• Mapping of drug and side effect IDs

  #45 opened 2 years ago by calyptis
  2

• Missing events in onsides

  #61 opened 4 months ago by ntatonetti
  1

• DailyMed bulk downloads don't seem to contain all historical versions

  #60 opened 5 months ago by ntatonetti
  0

• pt to llt

  #59 opened 5 months ago by sophiaKivelson
  0

• upload_date in dm_spl_zip_files_meta_data is in MM/DD/YYYY format

  #58 opened 5 months ago by ntatonetti
  0

• Problem w/ candesartan

  #57 opened 6 months ago by undinag
  0

• Refactor create_onides_datafiles.py to pull thresholds from experiments.json file

  #49 opened a year ago by gsirdeshmukh
  1

• Add argument for label type

  #51 opened a year ago by gsirdeshmukh
  0

• Implement tracking strategy for deployment_tracker

  #50 opened a year ago by gsirdeshmukh
  0

• Move processing of deepcadrme output to a script

  #48 opened a year ago by gsirdeshmukh
  0

• download_and_verify does not properly check for already downloaded and verified file

  #46 opened a year ago by ntatonetti
  0

• Investigate if and when the set ids for the labels change

  #44 opened 2 years ago by ntatonetti
  0

• Extract source of side effect information

  #43 opened 2 years ago by ntatonetti
  0

• Bug in TWOSIDES

  #41 opened 2 years ago by jasperhyp
  0

• Extracting TWOSIDES-like polypharmacy side effects from ONSIDES

  #40 opened 2 years ago by jasperhyp
  0

• Extract contraindications from labels

  #39 opened 2 years ago by ntatonetti
  0

• Web: drug pages with nothing on them

  #16 opened 2 years ago by ntatonetti
  1

• Validate the quick start instructions on the README.md

  #20 opened 2 years ago by ntatonetti
  0

• create sql subdirectory in src to house sql scripts

  #37 opened 2 years ago by ntatonetti
  0

• Validate and fix and create table sql file

  #35 opened 2 years ago by ntatonetti
  0

• Create load data sql file

  #36 opened 2 years ago by ntatonetti
  0

• some rows have data loss for columns ingredient_rxcuis and ingredient_names

  #38 opened 2 years ago by ntatonetti
  0

• Add description of semantic versioning for OnSIDES

  #34 opened 2 years ago by ntatonetti
  0

• Add some notes on running time/computational requirements

  #33 opened 2 years ago by ntatonetti
  1

• Extract indications

  #23 opened 2 years ago by ntatonetti
  0

• Add website (nsides.io) markdown files to source control

  #32 opened 2 years ago by ntatonetti
  0

• Create another reference set of 50-100 labels

  #31 opened 2 years ago by ntatonetti
  0

• Add ability to continue a previously incomplete run

  #30 opened 2 years ago by ntatonetti
  0

• OTC Labels

  #29 opened 2 years ago by ntatonetti
  1

• OVERDOSAGE

  #28 opened 2 years ago by ntatonetti
  1

• Characterize reference sets

  #27 opened 2 years ago by ntatonetti
  0

• Look into using manual curation flags

  #26 opened 2 years ago by ntatonetti
  0

• Update the nsides.io page

  #18 opened 2 years ago by ntatonetti
  0

• Add sample CSVs

  #6 opened 2 years ago by cthoyt
  1

• Tune the learning-rate hyperparameter for BW

  #25 opened 2 years ago by ntatonetti
  0

• Implement dependency check into experiment_tracker.py

  #24 opened 2 years ago by ntatonetti
  0

• Add logging to pipeline

  #22 opened 2 years ago by ntatonetti
  0

• Extract frequency data for ADRs

  #21 opened 2 years ago by ntatonetti
  0

• update SCHEMA.md with V02 structure

  #19 opened 2 years ago by ntatonetti
  1

• Web: add content for "previews"

  #17 opened 2 years ago by ntatonetti
  0

• Web: Searching shows "no results for drugs" while pending

  #15 opened 2 years ago by ntatonetti
  1

• Add official script performance to readme and website

  #13 opened 2 years ago by ntatonetti
  1

• extra columns in label_map

  #11 opened 2 years ago by ntatonetti
  1

• Add ingredient count and indices to adverse_reactions table

  #8 opened 2 years ago by ntatonetti
  1

• Remove unnecessary quotes around values in exported CSV files

  #10 opened 2 years ago by ntatonetti
  0

• add PT-only adverse_reactions table

  #9 opened 2 years ago by ntatonetti
  1

• When if ever will analysis.json be restored to the repo?

  #14 opened 2 years ago by sincak
  2

• Mechanism to notify those interested in updates

  #12 opened 3 years ago by ntatonetti
  0

• Add README describing what the columns of all CSV files are in CSV export

  #7 opened 3 years ago by cthoyt
  1