Issues
- 5
- 5
- 7
how to get single l2fc & padj for the additive effects of two factors of geneA (2 levels) and geneB (3 levels)
#10 opened by Gloriafu - 7
when I calculate coefficient vectors for each group the results are not the same as when the coefficients estimated by DEseq
#9 opened by pariaaliour - 1
- 1
Is the output of contrast = 2-1 logfoldchange2/logfoldchange1 or logfoldchange2-logfoldchange1?
#8 opened by pariaaliour - 2
- 6
Not an issue but rather a request for LRT tutorial the way you have shown here for deseq2 model matrix design
#4 opened by kcmtest - 1
- 0
- 1
inconsistent contrast results
#1 opened by jasminetat