Pinned Repositories
annotateMaf
Add functional variant annotation to MAF file
BRCA
composite-mutations
Companion code to the paper "Phase and context shapes the function of composite oncogenic mutations"
facets-preview
Load, review and adjust facets fits
facets-suite
Tools for copy-number analysis using FACETS
GD
hotspots
Identifying recurrent mutations in cancer
mutationSignatureWaterfallPlots
utilities to make waterfall plots of mutation signature data
neoantigen-dev
neoantigen prediction from WES/WGS
somatic-germline
data/scripts associated with somatic-germline manuscript
Barry Taylor's Lab's Repositories
taylor-lab/hotspots
Identifying recurrent mutations in cancer
taylor-lab/annotateMaf
Add functional variant annotation to MAF file
taylor-lab/facets-preview
Load, review and adjust facets fits
taylor-lab/somatic-germline
data/scripts associated with somatic-germline manuscript
taylor-lab/BRCA
taylor-lab/composite-mutations
Companion code to the paper "Phase and context shapes the function of composite oncogenic mutations"
taylor-lab/neoantigen-dev
neoantigen prediction from WES/WGS
taylor-lab/GD
taylor-lab/mutationSignatureWaterfallPlots
utilities to make waterfall plots of mutation signature data
taylor-lab/facets-suite
Tools for copy-number analysis using FACETS
taylor-lab/ccs-post-filters
Run extra filters on Roslin 2.4.1 mafs, to apply strand bias and mapping quality filters
taylor-lab/wes-sample-selection
Sample selection for exome sequencing based on dmp/IMPACT sequencing metrics
taylor-lab/MSI-NS
taylor-lab/RET
Companion code to the paper "The evolution of RET inhibitor resistance in RET-driven lung and thyroid cancers"
taylor-lab/akt1
companion code for article "AKT mutant allele-specific activation dictates pharmacologic sensitivities"
taylor-lab/hypermutation
scripts for general use for lab from Noah's hypermutation project
taylor-lab/recap-wes-process
Processing recaptured exomes starting from Roslin mafs