Pinned Repositories
2020-CBMS-DoubleU-Net
DoubleU-Net for Semantic Image Segmentation in TensorFlow Keras (Nominated for Best Paper Award (IEEE CBMS))
2D-GEM
Exact 3D shape matching via 2D-graph convolution (Neurips2022). url=
3D-CODED
Pytorch Implementation for the project : `3D-CODED` and `Learning Elementary Structure`
3D-Shape-Matching
A Matlab implementation of the paper "geodesic distance descriptors" for 3D non-rigid shape correspondence.
3D_shapes_tools
3D toolbox I constantly update
astra-toolbox
ASTRA Tomography Toolbox
AuToSeg
BASH-Model
We developed a method animating a statistical 3D human model for biomechanical analysis to increase accessibility for non-experts, like patients, athletes, or designers.
bayesian_unet
Chainer implementation of Bayesian Convolutional Neural Networks (BCNNs)
bcpd
Bayesian Coherent Point Drift (BCPD/BCPD++)
tbredbenner's Repositories
tbredbenner/2D-GEM
Exact 3D shape matching via 2D-graph convolution (Neurips2022). url=
tbredbenner/AuToSeg
tbredbenner/BASH-Model
We developed a method animating a statistical 3D human model for biomechanical analysis to increase accessibility for non-experts, like patients, athletes, or designers.
tbredbenner/BMD-GAN
tbredbenner/Bones-segmentation-in-CT-scans
Repository with the code of the master thesis "A deep learning approach to bone segmentation in CT scans"
tbredbenner/CarGen
Python code for the paper "A direct geometry processing cartilage generation method for using segmented bone models from datasets with poor cartilage visibility”
tbredbenner/CTSpine1K
A Large-Scale Dataset for Spinal Vertebrae Segmentation in Computed Tomography
tbredbenner/Deep-Learning-Models-4-Muscle-Bones-Segmentation
tbredbenner/entente
Polygonal meshes in vertex-wise correspondence
tbredbenner/EvaluateSegmentation
A program to evaluate the quality of image segmentations.
tbredbenner/Femur_segmentation
tbredbenner/flowssm
tbredbenner/freemocap
Free Motion Capture for Everyone 💀✨
tbredbenner/libhip
LibHip: An Open-Access Hip Joint Model Repository suitable for Finite Element Method Simulation
tbredbenner/Lifelong-nnUNet
tbredbenner/LSG-CPD
[ICCV 2021] CPD with Local Surface Geometry (LSG-CPD)
tbredbenner/mechanics_textbook
Open Mechanics Textbook Project
tbredbenner/MOOSE
MOOSE (Multi-organ objective segmentation) a data-centric AI solution that generates multilabel organ segmentations to facilitate systemic TB whole-person research.The pipeline is based on nn-UNet and has the capability to segment 120 unique tissue classes from a whole-body 18F-FDG PET/CT image.
tbredbenner/MultiPlanarUNet
Multi-Planar UNet for autonomous segmentation of 3D medical images
tbredbenner/NDC
PyTorch implementation of Neural Dual Contouring.
tbredbenner/NMC
PyTorch implementation for paper Neural Marching Cubes.
tbredbenner/probreg
Python package for point cloud registration using probabilistic model (Coherent Point Drift, GMMReg, SVR, GMMTree, FilterReg, Bayesian CPD)
tbredbenner/proximal_femur_BMD_measurement
tbredbenner/sas7bdat-web-viewer
tbredbenner/SegmentAnyBone
SegmentAnyBone: A Universal Model that Segments Any Bone at Any Location on MRI
tbredbenner/symmetric-volume-maps
Source code for "Symmetric Volume Maps" paper. Computes dense correspondences between tetrahedral meshes.
tbredbenner/TotalSegmentator
Tool for robust segmentation of >100 important anatomical structures in CT images
tbredbenner/unsupervised_learning_of_dense_shape_correspondence
tbredbenner/Voxurf
[ ICLR 2023 Spotlight ] Pytorch implementation for "Voxurf: Voxel-based Efficient and Accurate Neural Surface Reconstruction"
tbredbenner/XNet
CNN implementation for medical X-Ray image segmentation